YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45435273, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45435273, gi|....

Description	E-value	Query Range	Subject Range
gi\|67157940, gi\|... - gi\|67157940\|ref\|ZP_00419085.1\| Inorganic diphosphatase [Azotobacter vinelandii AvOP], gi\|67085209\|gb... gi\|67157940 - gi\|67157940\|ref\|ZP_00419085.1\| Inorganic diphosphatase [Azotobacter vinelandii AvOP]	8.0E-75	[1..175]	[330..504]
gi\|238792995, gi... - gi\|77977606\|ref\|ZP_00833050.1\| COG0221: Inorganic pyrophosphatase [Yersinia intermedia ATCC 29909], ...	5.0E-70	[1..175]	[1..175]
gi\|238718574, gi... - gi\|77961844\|ref\|ZP_00825673.1\| COG0221: Inorganic pyrophosphatase [Yersinia mollaretii ATCC 43969], ...	7.0E-70	[1..175]	[1..175]
gi\|115515697, gi... - gi\|117626573\|ref\|YP_859896.1\| inorganic pyrophosphatase [Escherichia coli APEC O1], gi\|115515697\|gb\|... gi\|170021762, gi... - gi\|170021762\|ref\|YP_001726716.1\| inorganic pyrophosphatase [Escherichia coli ATCC 8739], gi\|16975669... gi\|124500731, gi... - gi\|124528289\|ref\|ZP_01699613.1\| Inorganic diphosphatase [Escherichia coli B], gi\|124500731\|gb\|EAY482... gi\|218692615, gi... - gi\|218692615\|ref\|YP_002400827.1\| inorganic pyrophosphatase [Escherichia coli ED1a], gi\|218430179\|emb... gi\|218368156, gi... - gi\|218561387\|ref\|YP_002394300.1\| inorganic pyrophosphatase [Escherichia coli S88], gi\|218368156\|emb\|... gi\|218434933, gi... - gi\|218707836\|ref\|YP_002415355.1\| inorganic pyrophosphatase [Escherichia coli UMN026], gi\|218434933\|e... gi\|218697977, gi... - gi\|218697977\|ref\|YP_002405644.1\| inorganic pyrophosphatase [Escherichia coli 55989], gi\|218354709\|em... IPYR_ECOL6 - Inorganic pyrophosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ppa PE=3... gi\|75515464, gi\|... - gi\|75515464\|ref\|ZP_00737621.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli 53638], gi\|18849... gi\|110644588, gi... - gi\|110644588\|ref\|YP_672318.1\| inorganic pyrophosphatase [Escherichia coli 536], gi\|110346180\|gb\|ABG7... gi\|193063638, gi... - gi\|75258329\|ref\|ZP_00729760.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli E22], gi\|1930636... gi\|91075354, gi\|... - gi\|91213780\|ref\|YP_543766.1\| inorganic pyrophosphatase [Escherichia coli UTI89], gi\|91075354\|gb\|ABE1... gi\|191170839, gi... - gi\|75242385\|ref\|ZP_00726147.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli F11], gi\|1911708... gi\|75235466, gi\|... - gi\|75235466\|ref\|ZP_00719674.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli E110019], gi\|193... IPYR_ECOL6 - Inorganic pyrophosphatase OS=Escherichia coli O6 GN=ppa PE=3 SV=3 gi\|75229598, gi\|... - gi\|75229598\|ref\|ZP_00716137.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli B7A], gi\|1911672... gi\|194426577, gi... - gi\|75212218\|ref\|ZP_00712258.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli B171], gi\|194426... gi\|157079818, gi... - gi\|75188940\|ref\|ZP_00702207.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli E24377A], gi\|157... gi\|83586744, gi\|... - gi\|83586744\|ref\|ZP_00925376.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli 101-1], gi\|19443... gi\|194417876, gi... - gi\|83569401\|ref\|ZP_00920855.1\| COG0221: Inorganic pyrophosphatase [Shigella dysenteriae 1012], gi\|19... gi\|227836295, gi... - gi\|227886722\|ref\|ZP_04004527.1\| inorganic pyrophosphatase [Escherichia coli 83972], gi\|227836295\|gb\|... gi\|226901812, gi... - gi\|237703900\|ref\|ZP_04534381.1\| inorganic pyrophosphatase [Escherichia sp. 3_2_53FAA], gi\|226901812\|... gi\|251787476, gi... - gi\|251787476\|ref\|YP_003001780.1\| hypothetical protein B21_04059 [Escherichia coli BL21], gi\|24237974... gi\|254290905, gi... - gi\|254290905\|ref\|YP_003056655.1\| inorganic pyrophosphatase [Escherichia coli BL21(DE3)], gi\|25398021... gi\|254037246, gi... - gi\|254037246\|ref\|ZP_04871323.1\| inorganic pyrophosphatase [Escherichia sp. 1_1_43], gi\|226840352\|gb\|... gi\|254164155, gi... - gi\|254164155\|ref\|YP_003047265.1\| inorganic pyrophosphatase [Escherichia coli B str. REL606], gi\|2539...	8.0E-70	[1..174]	[1..174]
gi\|238715596, gi... - gi\|77958766\|ref\|ZP_00822794.1\| COG0221: Inorganic pyrophosphatase [Yersinia bercovieri ATCC 43970], ...	1.0E-69	[1..175]	[1..175]
gi\|238861510, gi... - gi\|238903331\|ref\|YP_002929127.1\| inorganic pyrophosphatase [Escherichia coli BW2952], gi\|238861510\|g... gi\|254796246, gi... - gi\|254796246\|ref\|YP_003081083.1\| inorganic pyrophosphatase [Escherichia coli O157:H7 str. TW14359], ... gi\|188014807, gi... - gi\|188014807\|gb\|EDU52929.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4113], gi\|16875... gi\|168754802, gi... - gi\|189357767\|gb\|EDU76186.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|13364681, gi\|... - gi\|15834458\|ref\|NP_313231.1\| inorganic pyrophosphatase [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|168760474, gi... - gi\|189368952\|gb\|EDU87368.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|189364279, gi... - gi\|189364279\|gb\|EDU82698.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|187770258, gi... - gi\|187770258\|gb\|EDU34102.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|82546525, gi\|... - gi\|82546525\|ref\|YP_410472.1\| inorganic pyrophosphatase [Shigella boydii Sb227], gi\|81247936\|gb\|ABB68... gi\|85676977, gi\|... - gi\|89110946\|ref\|AP_004726.1\| inorganic pyrophosphatase [Escherichia coli str. K-12 substr. W3110], g... gi\|74314704, gi\|... - gi\|74314704\|ref\|YP_313123.1\| inorganic pyrophosphatase [Shigella sonnei Ss046], gi\|73858181\|gb\|AAZ90... gi\|82779485, gi\|... - gi\|82779485\|ref\|YP_405834.1\| inorganic pyrophosphatase [Shigella dysenteriae Sd197], gi\|81243633\|gb\|... gi\|208819390, gi... - gi\|208819390\|ref\|ZP_03259710.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|209396030, gi... - gi\|209396030\|ref\|YP_002273769.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|209914981, gi... - gi\|209921722\|ref\|YP_002295806.1\| inorganic pyrophosphatase [Escherichia coli SE11], gi\|209914981\|dbj... gi\|217325669, gi... - gi\|217325669\|ref\|ZP_03441753.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|187430491, gi... - gi\|75179327\|ref\|ZP_00699331.1\| COG0221: Inorganic pyrophosphatase [Shigella boydii BS512], gi\|187733... gi\|218556777, gi... - gi\|218556777\|ref\|YP_002389691.1\| inorganic pyrophosphatase [Escherichia coli IAI1], gi\|218363546\|emb... gi\|157163700, gi... - gi\|75198078\|ref\|ZP_00708148.1\| COG0221: Inorganic pyrophosphatase [Escherichia coli HS], gi\|15716370... gi\|188999801, gi... - gi\|188999801\|gb\|EDU68787.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|168784869, gi... - gi\|189374756\|gb\|EDU93172.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC869], gi\|168784... gi\|189379595, gi... - gi\|189379595\|gb\|EDU98011.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC508], gi\|168797... gi\|170083670, gi... - gi\|170083670\|ref\|YP_001732990.1\| inorganic pyrophosphatase [Escherichia coli str. K-12 substr. DH10B... gi\|170517961, gi... - gi\|170680243\|ref\|YP_001746628.1\| inorganic diphosphatase [Escherichia coli SMS-3-5], gi\|170517961\|gb... gi\|195937253 - gi\|195937253\|ref\|ZP_03082635.1\| inorganic pyrophosphatase [Escherichia coli O157:H7 str. EC4024] gi\|208728786, gi... - gi\|208808985\|ref\|ZP_03251322.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|208733577, gi... - gi\|208812300\|ref\|ZP_03253629.1\| inorganic diphosphatase [Escherichia coli O157:H7 str. EC4045], gi\|2... IPYR_ECOLI - Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase) - Escherichia coli EG10755 - inorganic pyrophosphatase / Inorganic pyrophosphatase; binds Zn(II); homohexameric, dimer of trimers IPYR_ECO57 - Inorganic pyrophosphatase OS=Escherichia coli O157:H7 GN=ppa PE=3 SV=2 EG10755 - inorganic pyrophosphatase / Inorganic pyrophosphatase; binds Zn(II); homohexameric, dimer of trimers gi\|15804817, gi\|... - gi\|15804817\|ref\|NP_290858.1\| inorganic pyrophosphatase [Escherichia coli O157:H7 EDL933], gi\|1251922...	1.0E-69	[1..174]	[1..174]
gi\|37528370, gi\|... - gi\|37528370\|ref\|NP_931715.1\| inorganic pyrophosphatase [Photorhabdus luminescens subsp. laumondii TT...	3.0E-69	[1..175]	[1..175]
gi\|85058333, gi\|... - gi\|85058333\|ref\|YP_454035.1\| inorganic pyrophosphatase [Sodalis glossinidius str. 'morsitans'], gi\|8...	3.0E-69	[1..175]	[1..175]
gi\|56480564, gi\|... - gi\|56480564\|ref\|NP_709975.2\| inorganic pyrophosphatase [Shigella flexneri 2a str. 301], gi\|56384115\|... gi\|30065484, gi\|... - gi\|30065484\|ref\|NP_839655.1\| inorganic pyrophosphatase [Shigella flexneri 2a str. 2457T], gi\|3004374... gi\|110808031, gi... - gi\|110808031\|ref\|YP_691551.1\| inorganic pyrophosphatase [Shigella flexneri 5 str. 8401], gi\|11061757...	5.0E-69	[1..174]	[1..174]
gi\|213621919 - gi\|213621919\|ref\|ZP_03374702.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213649720 - gi\|213649720\|ref\|ZP_03379773.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213855326 - gi\|213855326\|ref\|ZP_03383566.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213980254 - gi\|213980254\|ref\|ZP_03407513.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213161827 - gi\|213161827\|ref\|ZP_03347537.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213417779 - gi\|213417779\|ref\|ZP_03350893.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213428289 - gi\|213428289\|ref\|ZP_03361039.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|213581109 - gi\|213581109\|ref\|ZP_03362935.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|204926814, gi... - gi\|204926814\|ref\|ZP_03218016.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar... gi\|205355170, gi... - gi\|205355170\|ref\|YP_002228971.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... gi\|207859561, gi... - gi\|207859561\|ref\|YP_002246212.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... gi\|213029674 - gi\|213029674\|ref\|ZP_03344121.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|197241200, gi... - gi\|197262945\|ref\|ZP_03163019.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar... gi\|238910571 - gi\|238910571\|ref\|ZP_04654408.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|197365130, gi... - gi\|197365130\|ref\|YP_002144767.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... gi\|198243796, gi... - gi\|198243796\|ref\|YP_002218297.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serova... gi\|199606147, gi... - gi\|200389049\|ref\|ZP_03215661.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar... gi\|214002804 - gi\|214002804\|ref\|ZP_03413539.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serov... gi\|224586257, gi... - gi\|224586257\|ref\|YP_002640056.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... IPYR_SALTY - Inorganic pyrophosphatase OS=Salmonella typhimurium GN=ppa PE=3 SV=2 gi\|62130491, gi\|... - gi\|62182858\|ref\|YP_219275.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serovar ... IPYR_SALTY - Inorganic pyrophosphatase OS=Salmonella typhimurium GN=ppa PE=3 SV=2 gi\|56416207, gi\|... - gi\|56416207\|ref\|YP_153282.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serovar ... IPYR_SALTI - Inorganic pyrophosphatase OS=Salmonella typhi GN=ppa PE=3 SV=2 IPYR_SALTY - Inorganic pyrophosphatase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ppa PE=... IPYR_SALTI - Inorganic pyrophosphatase OS=Salmonella typhi GN=ppa PE=3 SV=2 lcl\|NC_016856.1_... - [gene=ppa] [protein=inorganic pyrophosphatase] [protein_id=YP_005240732.1] [location=complement(4667... gi\|16763234 - gi\|16763234\|ref\|NP_458851.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serovar ... gi\|29144713, gi\|... - gi\|29144713\|ref\|NP_808055.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica serovar ... gi\|194408939, gi... - gi\|194450635\|ref\|YP_002048457.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... gi\|194472154, gi... - gi\|194472154\|ref\|ZP_03078138.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar... gi\|194737056, gi... - gi\|194737056\|ref\|YP_002117354.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serova... gi\|197211690, gi... - gi\|197247987\|ref\|YP_002149329.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serova... gi\|168262556, gi... - gi\|205348878\|gb\|EDZ35509.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Had... gi\|195632650, gi... - gi\|195632650\|gb\|EDX51104.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar New... gi\|168821172, gi... - gi\|205342321\|gb\|EDZ29085.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Wel... gi\|194405222, gi... - gi\|194446559\|ref\|YP_002043671.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serova... gi\|167991190, gi... - gi\|205330283\|gb\|EDZ17047.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar 4,[... gi\|205332998, gi... - gi\|205332998\|gb\|EDZ19762.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Ken... gi\|197291915, gi... - gi\|197291915\|gb\|EDY31265.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Sch... gi\|168244088, gi... - gi\|205337010\|gb\|EDZ23774.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Hei... gi\|161617692, gi... - gi\|161617692\|ref\|YP_001591657.1\| inorganic pyrophosphatase [Salmonella enterica subsp. enterica sero... gi\|205323871, gi... - gi\|205323871\|gb\|EDZ11710.1\| inorganic diphosphatase [Salmonella enterica subsp. enterica serovar Sai...	9.0E-69	[1..175]	[1..175]

Back

Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNQVPAGK DLPEDIYVVI EIPANADPIK YEIDKETGSL FVDRFMSTAM FYPCNYGYIN  60
   61 NTLSLDGDPV DVLVPTPYPL QPGSVIRCRP VGVLKMTDEA GEDAKLVAVP HSKLTKEYDH 120
  121 VKDVQDLPEL LKAQIKHFFE HYKDLETGKW VKVDGWEDAA AAKAEILSSF ERAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.045757
Match:	1fajA
Description:	INORGANIC PYROPHOSPHATASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
inorganic diphosphatase activity	2.74116819406619	bayes_pls_golite062009
catalytic activity	1.33262120571864	bayes_pls_golite062009
binding	0.737012988130381	bayes_pls_golite062009
hydrolase activity	0.622613523623213	bayes_pls_golite062009
protein binding	0.30018672253552	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.130183342564216	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.129135337748915	bayes_pls_golite062009
pyrophosphatase activity	0.125429411374269	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: