YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22124566, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22124566, gi|....

Description	E-value	Query Range	Subject Range
gi\|113530759, gi... - gi\|116696260\|ref\|YP_841836.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha ...	1.0E-70	[1..220]	[1..223]
YTFE_YERPS - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype I (strain IP32953) G... YTFE_YERPY - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) G... YTFE_YERPS, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis GN=ytfE PE=3 SV=1, Regulator ... YTFE_YERP3 - Iron-sulfur cluster repair protein YtfE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 3175...	5.0E-70	[1..221]	[1..221]
gi\|17549179 - gi\|17549179\|ref\|NP_522519.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia solanacear... gi\|17431431 - gi\|17431431\|emb\|CAD18109.1\| probable hypothetical protein [Ralstonia solanacearum GMI1000]	3.0E-69	[1..221]	[1..223]
gi\|72122218, gi\|... - gi\|73538881\|ref\|YP_299248.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha J...	7.0E-69	[1..217]	[1..218]
gi\|197242345, gi... - gi\|197264090\|ref\|ZP_03164164.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALTY, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium GN=ytfE PE=3 SV=1, Regulator of ce... lcl\|NC_016856.1_... - [gene=ytfE] [protein=cell morphogenesis/cell wall metabolism regulator] [protein_id=YP_005240714.1] ... RCMNS_SALTY - Regulator of cell morphogenesis and NO signaling OS=Salmonella typhimurium GN=ytfE PE=3 SV=1 YTFE_SALTY - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|167991172, gi... - gi\|205330323\|gb\|EDZ17087.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su...	8.0E-69	[1..221]	[1..220]
gi\|238910556 - gi\|238910556\|ref\|ZP_04654393.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... YTFE_SALG2 - Iron-sulfur cluster repair protein YtfE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ytf... gi\|204926968, gi... - gi\|204926968\|ref\|ZP_03218170.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALPC - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi C (strain RKS4594) GN=ytfE PE=3 SV=1 YTFE_SALEP - Iron-sulfur cluster repair protein YtfE OS=Salmonella enteritidis PT4 (strain P125109) GN=ytfE PE=3 ... YTFE_SALPA - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ytf... YTFE_SALA4 - Iron-sulfur cluster repair protein YtfE OS=Salmonella agona (strain SL483) GN=ytfE PE=3 SV=1 gi\|194458414, gi... - gi\|194472050\|ref\|ZP_03078034.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALDC - Iron-sulfur cluster repair protein YtfE OS=Salmonella dublin (strain CT_02021853) GN=ytfE PE=3 SV=1 YTFE_SALPK - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain AKU_12601) GN=ytfE PE=3 SV... gi\|205342276, gi... - gi\|205342276\|gb\|EDZ29040.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALPB - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y... gi\|195632942, gi... - gi\|195632942\|gb\|EDX51396.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALHS - Iron-sulfur cluster repair protein YtfE OS=Salmonella heidelberg (strain SL476) GN=ytfE PE=3 SV=1 YTFE_SALNS - Iron-sulfur cluster repair protein YtfE OS=Salmonella newport (strain SL254) GN=ytfE PE=3 SV=1 gi\|168232747, gi... - gi\|205332972\|gb\|EDZ19736.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205323879, gi... - gi\|205323879\|gb\|EDZ11718.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205348673, gi... - gi\|205348673\|gb\|EDZ35304.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|168244106, gi... - gi\|205337067\|gb\|EDZ23831.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... RCMNS_SALPB - Regulator of cell morphogenesis and NO signaling OS=Salmonella paratyphi B (strain ATCC BAA-1250 / S... YTFE_SALPA, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A GN=ytfE PE=3 SV=1, Regulator of ce...	9.0E-69	[1..221]	[1..220]
YTFE_SALCH - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis (strain SC-B67) GN=ytfE PE=3 SV=1 YTFE_SALCH, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1, Regulator of c... RCMNS_SALCH - Regulator of cell morphogenesis and NO signaling OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1	1.0E-68	[1..221]	[1..220]
YTFE_ECOL6 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... YTFE_ECOUT - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain UTI89 / UPEC) GN=ytfE PE=3 SV=1 YTFE_ESCF3 - Iron-sulfur cluster repair protein YtfE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / C... YTFE_ECO7I - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ytfE PE=... gi\|227886738, gi... - gi\|227886738\|ref\|ZP_04004543.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli ... YTFE_ECOK1 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O1:K1 / APEC GN=ytfE PE=3 SV=1 gi\|237703886, gi... - gi\|237703886\|ref\|ZP_04534367.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia sp. 3... YTFE_ECOSM - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ytfE PE=3 SV... sp\|B7UQM4\|YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... gi\|170766934, gi... - gi\|170766934\|ref\|ZP_02901387.1\| regulator of cell morphogenesis and NO signaling [Escherichia albert... YTFE_ECOL6, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6 GN=ytfE PE=3 SV=1, Regulator of cell ...	3.0E-68	[1..221]	[1..220]
gi\|213650284 - gi\|213650284\|ref\|ZP_03380337.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... gi\|213855861 - gi\|213855861\|ref\|ZP_03384101.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... gi\|213974906 - gi\|213974906\|ref\|ZP_03402165.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... gi\|214003325 - gi\|214003325\|ref\|ZP_03414060.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... RCMNS_SALTI - Regulator of cell morphogenesis and NO signaling OS=Salmonella typhi GN=ytfE PE=3 SV=1 YTFE_SALTI - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhi GN=ytfE PE=3 SV=1 gi\|213161628 - gi\|213161628\|ref\|ZP_03347338.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... gi\|213428633 - gi\|213428633\|ref\|ZP_03361383.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... gi\|16763218 - gi\|16763218\|ref\|NP_458835.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enterica ... gi\|29144697, gi\|... - gi\|29144697\|ref\|NP_808039.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enterica ...	3.0E-68	[1..221]	[1..220]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYRNQSLGA LAIAIPRATK LFRQHQLDFC CGGKQTLLRA ANKLNLDIDA LEAQLSALQT  60
   61 EPH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.98
Match:	2fi0A
Description:	The crystal structure of the conserved domain protein from Streptococcus pneumoniae TIGR4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [64-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSEDWQQQPL TNLISFIISR YHDRHREQLP ELVLMAEKVE RVHGEKPTCP RGLAAELSAI  60
   61 LEELTQHMYK EEQILFPMIQ RGMGSQASGP IFVMEAEHDA VGQQLDVVKQ LTQNVTPPEG 120
  121 ACNTWRALYT GINEFITDLM EHIHLENNLL FPRALRGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.30103
Match:	2p0nA
Description:	No description for 2p0nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits