YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45442966, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45442966, gi|....

Description	E-value	Query Range	Subject Range
gi\|77632822, gi\|... - gi\|77632822\|ref\|ZP_00795010.1\| COG2829: Outer membrane phospholipase A [Yersinia pestis Angola], gi\|...	0.0	[1..292]	[1..292]
gi\|4104238 - gi\|4104238\|gb\|AAD03498.1\| outer membrane phospholipase A precursor; detergent resistent phospholipas...	0.0	[1..292]	[1..292]
gi\|77973640, gi\|... - gi\|77973640\|ref\|ZP_00829186.1\| COG2829: Outer membrane phospholipase A [Yersinia frederiksenii ATCC ...	0.0	[1..292]	[1..292]
gi\|77960559 - gi\|77960559\|ref\|ZP_00824425.1\| COG2829: Outer membrane phospholipase A [Yersinia mollaretii ATCC 439...	0.0	[1..292]	[1..292]
gi\|238712893, gi... - gi\|77956403\|ref\|ZP_00820505.1\| COG2829: Outer membrane phospholipase A [Yersinia bercovieri ATCC 439...	0.0	[1..292]	[1..292]
gi\|238793566, gi... - gi\|77978531\|ref\|ZP_00833959.1\| COG2829: Outer membrane phospholipase A [Yersinia intermedia ATCC 299...	0.0	[1..292]	[1..292]
gi\|117626080, gi... - gi\|117626080\|ref\|YP_859403.1\| phospholipase A [Escherichia coli APEC O1], gi\|115515204\|gb\|ABJ03279.1... gi\|191174268, gi... - gi\|75236872\|ref\|ZP_00720941.1\| COG2829: Outer membrane phospholipase A [Escherichia coli F11], gi\|19... gi\|26110991, gi\|... - gi\|26250561\|ref\|NP_756601.1\| phospholipase A [Escherichia coli CFT073], gi\|26110991\|gb\|AAN83175.1\|AE... gi\|91213346, gi\|... - gi\|91213346\|ref\|YP_543332.1\| phospholipase A [Escherichia coli UTI89], gi\|91074920\|gb\|ABE09801.1\| ph... gi\|110644146, gi... - gi\|110644146\|ref\|YP_671876.1\| phospholipase A [Escherichia coli 536], gi\|110345738\|gb\|ABG71975.1\| ph... gi\|227888593, gi... - gi\|227888593\|ref\|ZP_04006398.1\| phospholipase A [Escherichia coli 83972], gi\|227834432\|gb\|EEJ44898.1... gi\|215267221, gi... - gi\|215489149\|ref\|YP_002331580.1\| phospholipase A [Escherichia coli O127:H6 str. E2348/69], gi\|215267... gi\|226903002, gi... - gi\|237702831\|ref\|ZP_04533312.1\| phospholipase A1 [Escherichia sp. 3_2_53FAA], gi\|226903002\|gb\|EEH892... gi\|218692097, gi... - gi\|218692097\|ref\|YP_002400309.1\| phospholipase A [Escherichia coli ED1a], gi\|218429661\|emb\|CAR10482.... gi\|218367654, gi... - gi\|218560885\|ref\|YP_002393798.1\| phospholipase A [Escherichia coli S88], gi\|218367654\|emb\|CAR05439.1...	0.0	[8..292]	[8..289]
gi\|73857810, gi\|... - gi\|74314333\|ref\|YP_312752.1\| phospholipase A [Shigella sonnei Ss046], gi\|73857810\|gb\|AAZ90517.1\| out...	0.0	[8..292]	[8..289]
gi\|253326597, gi... - gi\|254290516\|ref\|YP_003056264.1\| outer membrane phospholipase A [Escherichia coli BL21(DE3)], gi\|253... gi\|251787080, gi... - gi\|251787080\|ref\|YP_003001384.1\| hypothetical protein B21_03649 [Escherichia coli BL21], gi\|24237935... gi\|194422441, gi... - gi\|83585932\|ref\|ZP_00924571.1\| COG2829: Outer membrane phospholipase A [Escherichia coli 101-1], gi\|... gi\|253975667, gi... - gi\|254163766\|ref\|YP_003046874.1\| outer membrane phospholipase A [Escherichia coli B str. REL606], gi...	0.0	[8..292]	[8..289]
PA1_ECOLI - Phospholipase A1 precursor (EC 3.1.1.32) (EC 3.1.1.4) (Detergent-resistant phospholipase A) (DR-phos... gi\|15834005, gi\|... - gi\|15834005\|ref\|NP_312778.1\| phospholipase A [Escherichia coli O157:H7 str. Sakai], gi\|13364227\|dbj\|... gi\|124499208, gi... - gi\|124530442\|ref\|ZP_01701100.1\| Phospholipase A(1) [Escherichia coli B], gi\|124499208\|gb\|EAY46701.1\|... gi\|188015418, gi... - gi\|188015418\|gb\|EDU53540.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4113], gi\|168750363\|re... gi\|168763950, gi... - gi\|189365988\|gb\|EDU84404.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4501], gi\|168763950\|re... gi\|168753722, gi... - gi\|189359094\|gb\|EDU77513.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4401], gi\|168753722\|re... gi\|110617035, gi... - gi\|110807487\|ref\|YP_691007.1\| phospholipase A [Shigella flexneri 5 str. 8401], gi\|110617035\|gb\|ABF05... gi\|168775624, gi... - gi\|187768860\|gb\|EDU32704.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4196], gi\|168775624\|re... gi\|189362718, gi... - gi\|189362718\|gb\|EDU81137.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4486], gi\|168768106\|re... gi\|189373318, gi... - gi\|189373318\|gb\|EDU91734.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC869], gi\|168786663\|ref... gi\|168780724, gi... - gi\|189001614\|gb\|EDU70600.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4076], gi\|168780724\|re... gi\|238861951, gi... - gi\|238902896\|ref\|YP_002928692.1\| outer membrane phospholipase A [Escherichia coli BW2952], gi\|238861... gi\|254795819, gi... - gi\|254795819\|ref\|YP_003080656.1\| outer membrane phospholipase A [Escherichia coli O157:H7 str. TW143... gi\|30064882, gi\|... - gi\|30064882\|ref\|NP_839053.1\| phospholipase A [Shigella flexneri 2a str. 2457T], gi\|30043142\|gb\|AAP18... gi\|217320855, gi... - gi\|217324634\|ref\|ZP_03440718.1\| phospholipase A1 [Escherichia coli O157:H7 str. TW14588], gi\|2173208... gi\|24054386, gi\|... - gi\|24115117\|ref\|NP_709627.1\| phospholipase A [Shigella flexneri 2a str. 301], gi\|24054386\|gb\|AAN4533... gi\|209921300, gi... - gi\|209921300\|ref\|YP_002295384.1\| phospholipase A [Escherichia coli SE11], gi\|209914559\|dbj\|BAG79633.... EG10738 - outer membrane phospholipase A / Outer-membrane phospholipase A; phospholipase A1; OmpLA gi\|218354274, gi... - gi\|218697542\|ref\|YP_002405209.1\| phospholipase A [Escherichia coli 55989], gi\|218354274\|emb\|CAV00960... PA1_ECO57 - Phospholipase A1 OS=Escherichia coli O157:H7 GN=pldA PE=3 SV=1 gi\|218363155, gi... - gi\|218556386\|ref\|YP_002389300.1\| phospholipase A [Escherichia coli IAI1], gi\|218363155\|emb\|CAR00796.... gi\|15804413, gi\|... - gi\|15804413\|ref\|NP_290453.1\| phospholipase A [Escherichia coli O157:H7 EDL933], gi\|12518695\|gb\|AAG59... gi\|169757085, gi... - gi\|170022157\|ref\|YP_001727111.1\| phospholipase A [Escherichia coli ATCC 8739], gi\|169757085\|gb\|ACA79... gi\|189376673, gi... - gi\|189376673\|gb\|EDU95089.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC508], gi\|168801111\|ref... gi\|195938113 - gi\|195938113\|ref\|ZP_03083495.1\| phospholipase A [Escherichia coli O157:H7 str. EC4024] gi\|169891137, gi... - gi\|170083302\|ref\|YP_001732622.1\| outer membrane phospholipase A [Escherichia coli str. K-12 substr. ... gi\|208812928, gi... - gi\|208812928\|ref\|ZP_03254257.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4045], gi\|20873420... gi\|208729395, gi... - gi\|208809594\|ref\|ZP_03251931.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4206], gi\|20872939... EG10738 - outer membrane phospholipase A / Outer-membrane phospholipase A; phospholipase A1; OmpLA gi\|209160749, gi... - gi\|209399349\|ref\|YP_002273340.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4115], gi\|2091607... gi\|208821845, gi... - gi\|208821845\|ref\|ZP_03262165.1\| phospholipase A1 [Escherichia coli O157:H7 str. EC4042], gi\|20874196... gi\|188487118, gi... - gi\|75512623\|ref\|ZP_00735135.1\| COG2829: Outer membrane phospholipase A [Escherichia coli 53638], gi\|... gi\|81243146, gi\|... - gi\|82778998\|ref\|YP_405347.1\| phospholipase A [Shigella dysenteriae Sd197], gi\|81243146\|gb\|ABB63856.1... gi\|75230782, gi\|... - gi\|75230782\|ref\|ZP_00717245.1\| COG2829: Outer membrane phospholipase A [Escherichia coli B7A], gi\|19... gi\|192926675, gi... - gi\|75256255\|ref\|ZP_00727933.1\| COG2829: Outer membrane phospholipase A [Escherichia coli E22], gi\|19... gi\|82546172, gi\|... - gi\|82546172\|ref\|YP_410119.1\| phospholipase A [Shigella boydii Sb227], gi\|81247583\|gb\|ABB68291.1\| out... gi\|89110199, gi\|... - gi\|89110199\|ref\|AP_003979.1\| outer membrane phospholipase A [Escherichia coli str. K-12 substr. W311... gi\|157068977, gi... - gi\|75197704\|ref\|ZP_00707774.1\| COG2829: Outer membrane phospholipase A [Escherichia coli HS], gi\|157... gi\|194412725, gi... - gi\|75209552\|ref\|ZP_00709773.1\| COG2829: Outer membrane phospholipase A [Escherichia coli B171], gi\|1... PA1_SHIFL - Phospholipase A1 OS=Shigella flexneri GN=pldA PE=3 SV=1 gi\|83569342, gi\|... - gi\|83569342\|ref\|ZP_00920797.1\| COG2829: Outer membrane phospholipase A [Shigella dysenteriae 1012], ... gi\|157159347, gi... - gi\|75188563\|ref\|ZP_00701830.1\| COG2829: Outer membrane phospholipase A [Escherichia coli E24377A], g...	0.0	[8..292]	[8..289]

Back

Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFWQILIA LLLVPTLAQA EEATIEKIHD APAVRGSIIA AMLQDHDNPF LLYPYETNYL  60
   61 LYTYTNEINK QAISSYDWAE QANKDEVKFQ LSLAFPIWRG IAGDNSLLGA SYTQRSWWQA 120
  121 SNSEESSPFR ETNYEPQLFL AWSTDYELAG WTFREVEFGF NHQSNGKADP TSRSWNRVYT 180
  181 RVMAQRGNLE IDLKPWYRIP ESDSKDDNPD ITKYMGYYRL KVGYALGDSV FSLDGRYNWN 240
  241 TGYGGAEMGW SYPITKHVRF YTQVFSGYGE SMIDYNFRQT RVGVGIMLND VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	1fw2A
Description:	Outer membrane phospholipase A (OMPLA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142826098671881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: