YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_CHLCV
Organism:	Chlamydophila caviae GPIC
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_CHLCV.

Description	E-value	Query Range	Subject Range
gi\|15836485, gi\|... - gi\|8979326\|dbj\|BAA99160.1\| S18 ribosomal protein [Chlamydophila pneumoniae J138], gi\|15836485\|ref\|NP... gi\|33242320, gi\|... - gi\|33242320\|ref\|NP_877261.1\| 30S ribosomal protein S18 [Chlamydophila pneumoniae TW-183], gi\|3323683... gi\|7189819, gi\|1... - gi\|7189819\|gb\|AAF38692.1\| ribosomal protein S18 [Chlamydophila pneumoniae AR39], gi\|16752078\|ref\|NP_... gi\|4377277, gi\|1... - gi\|4377277\|gb\|AAD19090.1\| S18 Ribosomal Protein [Chlamydophila pneumoniae CWL029], gi\|15618861\|ref\|N... RS18_CHLPN - 30S ribosomal protein S18 OS=Chlamydia pneumoniae GN=rpsR PE=3 SV=1	116.0	[0..1]	[82..1]
RS18_CHLFF - 30S ribosomal protein S18 OS=Chlamydia felis (strain Fe/C-56) GN=rpsR PE=3 SV=1	113.0	[0..1]	[82..1]
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	111.0	[0..11]	[81..3]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	111.0	[0..11]	[81..3]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	110.0	[0..12]	[81..8]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	110.0	[0..16]	[82..13]
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	110.0	[0..4]	[78..45]
RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsR PE=3 SV=1 gi\|229497916, gi... - gi\|229497916\|ref\|ZP_04391615.1\| ribosomal protein S18 [Geobacillus sp. Y412MC52], gi\|229331342\|gb\|EE... gi\|196249872, gi... - gi\|196249872\|ref\|ZP_03148568.1\| ribosomal protein S18 [Geobacillus sp. G11MC16], gi\|196210748\|gb\|EDY... gi\|221086943, gi... - gi\|221086943\|ref\|ZP_03556483.1\| ribosomal protein S18 [Geobacillus sp. Y412MC61], gi\|220708996\|gb\|EE... RS18_GEOTN - 30S ribosomal protein S18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsR PE=3 SV=2 RS18_GEOSE - 30S ribosomal protein S18 OS=Geobacillus stearothermophilus GN=rpsR PE=1 SV=2 RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus GN=rpsR PE=3 SV=1	110.0	[0..18]	[82..14]
gi\|242349573, gi... - gi\|242372656\|ref\|ZP_04818230.1\| 30S ribosomal protein S18 [Staphylococcus epidermidis M23864:W1], gi... RS18_STAEP - (Q8CQP6) 30S ribosomal protein S18 RS18_STAEQ - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsR PE=3 SV=... gi\|223043454, gi... - gi\|223043454\|ref\|ZP_03613500.1\| ribosomal protein S18 [Staphylococcus capitis SK14], gi\|222443243\|gb... RS18_STAES - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsR PE=3 SV=1	110.0	[0..16]	[82..13]
RS18_BACST - (P10806) 30S ribosomal protein S18 (BS21) (BS19)	110.0	[0..18]	[82..13]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPVHNNEH RRKRFNKKCP FVSAGWKTID YKDTETLKKF ITERGKILPR RITGVSSRFQ  60
   61 GTLTLAIKRA RHIGLLPFVA ED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.74194835757561	bayes_pls_golite062009
structural molecule activity	3.45591847600399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: