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View Structure Prediction Details

Protein: DXR_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DXR_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|17225989 - gi|17225989|gb|AAL37560.1|AF367205_1 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Oryz...
636.0 [0..1] [473..1]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKVVSFPG DLAAVSFLDS NRGGAFNQLK VDLPFQTRDR RAVSLRRTCC SMQQAPPPAW  60
   61 PGRAVVEPGR RSWD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1h6aA
Description: Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [75-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPKPISIVGS TGSIGTQTLD IVAENPDKFR VVALAAGSNV TLLADQVKTF KPKLVAVRNE  60
   61 SLVDELKEAL ADCDWKPEII PGEQGVIEVA RHPDAVTVVT GIVGCAGLKP TVAAIEAGKD 120
  121 IALANKETLI AGGPFVLPLA QKHKVKILPA DSEHSAIFQC IQGLPEGALR RIILTASGGA 180
  181 FRDWPVDKLK EVKVADALKH PNWNMGKKIT VDSATLFNKG LEVIEAHYLF GAEYDDIEIV 240
  241 IHPQSIIHSM IETQDSSVLA QLGWPDMRIP ILYTMSWPDR IYCSEVTWPR LDLCKLGSLT 300
  301 FKAPDNVKYP SMDLAYAAGR AGGTMTGVLS AANEKAVELF IDEKIGYLDI FKVVELTCDA 360
  361 HRNELVTRPS LEEIIHYDLW AREYAASLQP STGLSPVPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 133.0
Match: 2eghA
Description: No description for 2eghA was found.

Predicted functions:

Term Confidence Notes
1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.73695658845135 bayes_pls_golite062009
oxidoreductase activity 2.60548927745815 bayes_pls_golite062009
catalytic activity 2.54843319568228 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase activity 2.42852631499395 bayes_pls_golite062009
glucose-6-phosphate dehydrogenase activity 2.40527964325542 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.41676087939212 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity 1.08771562641109 bayes_pls_golite062009
retinol dehydrogenase activity 1.07588236908906 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.841370849960815 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle