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View Structure Prediction Details

Protein: gi|23612095, gi|...
Organism: Plasmodium falciparum 3D7
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23612095, gi|....

Description E-value Query
Range
Subject
Range
gi|3845330, gi|2... - gi|4493996|emb|CAB39055.1| Plasmodium exported protein (hyp4), unknown function [Plasmodium falcipar...
gi|7494389 - pir||D71601 probable secreted protein PFB0990c - malaria parasite (Plasmodium falciparum)
379.0 [0..1] [230..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYFLSLFNV SLFFLLIFKY SYKNIVKKDL QDKFNKSIIT INIASRILTE NNKKWYKKYI  60
   61 YTSIFSGNKN PQKRERKNEE ENQKDNTKVD NDNNMGNEME NHID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSIDDPMDDL MNDKWEHHNS LEDRIKEYYT LTDPSDGEEN NSFFKKLKLI MNILDEVHSD  60
   61 LLINNSVTDG SIFSPELVPI SVLSTMTLAC PPIGTVTLPY ITNRINFLNR YEGQNIHTEH 120
  121 DLKIFK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.877 N/A N/A a.79.1 Antitermination factor NusB


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle