YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3845205, gi\|1...
Organism:	Plasmodium falciparum 3D7
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3845205, gi|1....

Description	E-value	Query Range	Subject Range
MURG_VIBF1 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	182.0	[0..33]	[206..1]
gi\|91187948, gi\|... - gi\|91228514\|ref\|ZP_01262436.1\| N-acetylglucosaminyl transferase [Vibrio alginolyticus 12G01], gi\|911...	179.0	[0..33]	[206..1]
MURG_HAES1 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	178.0	[0..35]	[206..1]
MURG_PASMU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_PASMU - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	178.0	[0..33]	[206..1]
gi\|84374933, gi\|... - gi\|84394434\|ref\|ZP_00993150.1\| N-acetylglucosaminyl transferase [Vibrio splendidus 12B01], gi\|843749...	178.0	[0..33]	[206..1]
gi\|116183853, gi... - gi\|75854404\|ref\|ZP_00762099.1\| COG0707: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase ...	177.0	[0..33]	[206..1]
gi\|208733231, gi... - gi\|208811954\|ref\|ZP_03253283.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl... gi\|254791227, gi... - gi\|254791227\|ref\|YP_003076064.1\| UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapep tide) pyrophospho... gi\|208739695, gi... - gi\|208819572\|ref\|ZP_03259892.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl... MURG_ECO5E - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|217320566, gi... - gi\|217324345\|ref\|ZP_03440429.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl... MURG_ECO57 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|168789617, gi... - gi\|189370799\|gb\|EDU89215.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|25300237, gi\|... - pir\|\|F85491 hypothetical protein murG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168801517, gi... - gi\|189376368\|gb\|EDU94784.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|15829348, gi\|... - gi\|15829348\|ref\|NP_308121.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltr... gi\|195939306 - gi\|195939306\|ref\|ZP_03084688.1\| N-acetylglucosaminyl transferase [Escherichia coli O157:H7 str. EC40... gi\|12512793, gi\|... - gi\|15799774\|ref\|NP_285786.1\| N-acetylglucosaminyl transferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|208808188, gi... - gi\|208808188\|ref\|ZP_03250525.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl... gi\|189365904, gi... - gi\|189365904\|gb\|EDU84320.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|189359919, gi... - gi\|189359919\|gb\|EDU78338.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|168776934, gi... - gi\|187767744\|gb\|EDU31588.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|168781975, gi... - gi\|189000428\|gb\|EDU69414.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|168751400, gi... - gi\|188014530\|gb\|EDU52652.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|189357098, gi... - gi\|189357098\|gb\|EDU75517.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran...	177.0	[0..33]	[206..1]
MURG_VIBPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_VIBPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|153839053, gi... - gi\|153839053\|ref\|ZP_01991720.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyl...	176.0	[0..33]	[206..1]
MURG_SALPK - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_SALPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_SALPA - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	176.0	[0..33]	[206..1]
MURG_SALCH - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... MURG_SALCH - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam... gi\|195632681, gi... - gi\|195632681\|gb\|EDX51135.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... gi\|205348741, gi... - gi\|205348741\|gb\|EDZ35372.1\| undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltran... MURG_SALCH - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosam...	176.0	[0..33]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLFLCIII NTLVFLWFVI NIFLKSSNTY KDKGRNEMVE MGVVLGSGGH TYEMIQILKQ  60
   61 IKNSNILFNF FYSHNDNLSK IKTENELVNY QKNFFVIPRC RNVGDSYSLS FIKFIFSFLY 120
  121 CIFLTYKMKN MKVIMVNGPG VCVPLVYSLI FRKYIFLKNI KIVYIESICR VYSLSLSAKL 180
  181 LYYFADLFVV FSEHLKKKYK KAKYYGYFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1f0kA
Description:	Peptidoglycan biosynthesys glycosyltransferase MurG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits