YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|507789
Organism:	Plasmodium falciparum
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|507789.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	162.0	[0..67]	[348..1829]
gi\|29468 - gi\|29468\|emb\|CAA35940.1\| beta-myosin heavy chain (1151 AA) [Homo sapiens]	134.0	[0..67]	[348..41]
MYH7_CANLF - Myosin-7 OS=Canis lupus familiaris GN=MYH7 PE=1 SV=3	134.0	[0..67]	[348..825]
gi\|114652395 - gi\|114652395\|ref\|XP_001150786.1\| PREDICTED: myosin, heavy polypeptide 7, cardiac muscle, beta [Pan t...	133.0	[0..67]	[348..692]
gi\|2144825, gi\|5... - gi\|510178\|emb\|CAA84369.1\| beta cardiac myosin heavy chain [Oryctolagus cuniculus], pir\|\|MWRBCB myosi...	133.0	[0..67]	[348..462]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFINITLS LFLLHLYIYI NNVASKEIVK KYNLNLRNAI LNNNSQIENE ENVNTTITGN  60
   61 DFSGGEFLWP GYTEELKAKK ASEDAEKAAN DAENASKEAE EAAKEAVNLK ESDKSYTKAK 120
  121 EACTAASKAK KAVETALKAK DDAEKSSKAD SISTKTKEYA EKAKNAYEKA KNAYQKANQA 180
  181 VLKAKEASSY DYILGWEFGG GVPEHKKEEN MLSHLYVSSK DKENISKEND DVLDEKEEEA 240
  241 EETEEEELEE KNEEETESEI SEDEEEEEEE EEKEEENDKK KEQEKEQSNE NNDQKKDMEA 300
  301 QNLISKNQNN NEKNVKEAAE SIMKTLAGLI KGNNQIDSTL KDLVEELSKY FKNH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits