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View Structure Prediction Details

Protein: HRD1B_ARATH
Organism: Arabidopsis thaliana
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for HRD1B_ARATH.

Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLKVYAGL STLATLVVIY HAFSSRGQFY PATVYLSTSK INLVVLLNMG LVLMLSLWNL  60
   61 VKIVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS VGFISLVVTL LLIKGLHWMA 120
  121 QKRVEYIETT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVTLLSHVR IVSFMVFLLI LDCLLTYSSI QQLIQSRKAS MSVFFTFEYM ILATTTVSII  60
   61 VKYAFYVTDM LKEGQWEGKP VYTFYLELVR DLLHLSMYLC FFLMIFMNYG LPLHLIRELY 120
  121 ETFRNFKIRV TDYLRYRKIT SNMNDRFPDA TPEELSSNDA TCIICREEMT SAKKLVCGHL 180
  181 FHVHCLRSWL ERQNTCPTCR ALVVPAENAT STASGNRGPH Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1fbvA
Description: Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [352-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLQQGTGTS SSDGQGSSVS AAASENMSRH EARFQAAASA ASIYGRSIVY PSSANTLVWS  60
   61 QGNSLLPQTE VEAQRRFLES QIEVLTNQLR LLEKPTTVDT KGKSVADTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle