YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|78000190, gi\|...
Organism:	Rattus norvegicus
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|78000190, gi|....

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	180.0	[0..3]	[281..1848]
gi\|213636 - gi\|213636\|gb\|AAA49509.1\| alpha-tropomyosin gi\|86150 - gi\|86150\|pir\|\|A28499 tropomyosin alpha chain, skin fibroblast - Japanese quail gi\|833620, gi\|104894 - gi\|833620\|emb\|CAA41059.1\| alpha tropomyosin of fibroblasts F2 [Gallus gallus], pir\|\|S24402 alpha-tro...	165.0	[0..1]	[284..1]
gi\|74000387 - gi\|74000387\|ref\|XP_864999.1\| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris...	163.0	[0..1]	[284..1]
gi\|211226 - gi\|211226\|gb\|AAA48610.1\| alpha-tropomyosin	163.0	[0..1]	[284..1]
gi\|207351 - gi\|207351\|gb\|AAA21805.1\| non-muscle alpha tropomyosin	162.0	[0..1]	[284..1]
gi\|63252896, gi\|... - gi\|63252896\|ref\|NP_001018004.1\| tropomyosin 1 alpha chain isoform 3 [Homo sapiens], gi\|119598033\|gb\|... gi\|114657471 - gi\|114657471\|ref\|XP_001173694.1\| PREDICTED: tropomyosin 1 alpha chain isoform 17 [Pan troglodytes]	162.0	[0..1]	[284..1]
gi\|126277008 - gi\|126277008\|ref\|XP_001365954.1\| PREDICTED: similar to tropomyosin 2, fibroblast - rat isoform 4 [Mo... gi\|26328709 - gi\|26328709\|dbj\|BAC28093.1\| unnamed protein product [Mus musculus] gi\|109081395 - gi\|109081395\|ref\|XP_001103704.1\| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)...	162.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIKKKMQM LKLDKENALD RAEQAEADKK AAEDRSKQLE DELVSLQKKL KGTEDELDKY  60
   61 SEALKDAQEK LELAEKKATD AEADVASLNR RIQLVEEELD RAQERLATAL QKLEEAEKAA 120
  121 DESERGMKVI ESRAQKDEEK MEIQEIQLKE AKHIAEDADR KYEEVARKLV IIESDLERAE 180
  181 ERAELSEGKC AELEEELKTV TNNLKSLEAQ AEKYSQKEDK YEEEIKVLSD KLKEAETRAE 240
  241 FAERSVTKLE KSIDDLEEKV AHAKEENLSM HQMLDQTLLE LNNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits