YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55715856
Organism:	Xenopus laevis
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55715856.

Description	E-value	Query Range	Subject Range
gi\|109094513 - gi\|109094513\|ref\|XP_001107418.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta]	186.0	[0..1]	[117..28]
gi\|89628429 - gi\|89628429\|gb\|ABD77505.1\| 60S ribosomal protein L34-like protein [Ovis aries]	179.0	[0..1]	[116..12]
gi\|60834772 - gi\|60834772\|gb\|AAX37110.1\| ribosomal protein L34 [synthetic construct]	179.0	[0..1]	[117..1]
gi\|47206357 - gi\|47206357\|emb\|CAG12549.1\| unnamed protein product [Tetraodon nigroviridis]	178.0	[0..1]	[117..1]
gi\|50369170, gi\|... - gi\|89268915\|emb\|CAJ83240.1\| ribosomal protein L34b [Xenopus tropicalis], gi\|52346120\|ref\|NP_00100510...	178.0	[0..1]	[117..1]
gi\|50776426 - gi\|50776426\|ref\|XP_423263.1\| PREDICTED: similar to ribosomal protein L34; 60S ribosomal protein L34,...	177.0	[0..2]	[117..247]
gi\|34860562, gi\|... - ref\|XP_342343.1\| similar to ribosomal protein L34; 60S ribosomal protein L34 [Rattus norvegicus], g... gi\|194208532 - gi\|194208532\|ref\|XP_001503042.2\| PREDICTED: similar to ribosomal protein L34 [Equus caballus] gi\|119893569 - gi\|119893569\|ref\|XP_872717.2\| PREDICTED: ribosomal protein L34 [Bos taurus] gi\|114595604 - gi\|114595604\|ref\|XP_517387.2\| PREDICTED: similar to Ribosomal protein L34 [Pan troglodytes] ENSCJAT00000031116 - null gi\|73993472, gi\|... - gi\|73993472\|ref\|XP_850133.1\| PREDICTED: similar to ribosomal protein L34 [Canis familiaris], gi\|5710... gi\|60814025, gi\|... - gi\|61355240\|gb\|AAX41118.1\| ribosomal protein L34 [synthetic construct], gi\|60814025\|gb\|AAX36284.1\| r... tr\|M3WMR1\|M3WMR1... - Uncharacterized protein OS=Felis catus GN=RPL34 PE=4 SV=1 RPL34 - ribosomal protein L34 gi\|109075312, gi... - gi\|109149598\|ref\|XP_001083978.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta], gi\|10...	177.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRLTYRRR LSYNTASNKT RLSRTPGNRI VYLYTKKVGK APKSACGVCP GRLRGVRAVR  60
   61 PKVLMRLSKT QKHVSRAYGG SMCAKCVRDR IKRAFLIEEQ KIVVKVLKAQ AQSQKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.39794
Match:	PF01199.9
Description:	No description for PF01199.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits