YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57730
Organism:	Rattus rattus
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57730.

Description	E-value	Query Range	Subject Range
gi\|38101780, gi\|... - gi\|39975009\|ref\|XP_368895.1\| 40S ribosomal protein S13 [Magnaporthe grisea 70-15], gb\|EAA48691.1\| hy...	2.0E-61	[1..151]	[1..151]
gi\|109139180 - gi\|109139180\|ref\|XP_001119129.1\| PREDICTED: similar to ribosomal protein S13 [Macaca mulatta]	3.0E-61	[1..150]	[1..150]
gi\|61369380 - gi\|61369380\|gb\|AAX43326.1\| ribosomal protein S13 [synthetic construct]	3.0E-61	[1..151]	[1..151]
gi\|210104597, gi... - gi\|219460218\|ref\|XP_002227825.1\| hypothetical protein BRAFLDRAFT_115249 [Branchiostoma floridae], gi... gi\|24266981 - gi\|24266981\|gb\|AAN52387.1\| ribosomal protein S13 [Branchiostoma belcheri]	5.0E-61	[1..151]	[1..151]
RS13_XENLA - 40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2 gi\|89269947, gi\|... - gi\|89269947\|emb\|CAJ81269.1\| ribosomal protein S13 [Xenopus tropicalis], gi\|62860010\|ref\|NP_001016602...	8.0E-61	[1..151]	[1..151]
gi\|32419563, gi\|... - gi\|32419563\|ref\|XP_330225.1\| hypothetical protein [Neurospora crassa], gi\|28925804\|gb\|EAA34807.1\| 40... gi\|85111661 - gi\|85111661\|ref\|XP_964043.1\| 40S ribosomal protein S13 [Neurospora crassa OR74A]	1.0E-60	[1..151]	[1..151]
RS13_CRIGR - 40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3	1.0E-60	[1..151]	[1..151]
gi\|90304038, gi\|... - gi\|90304038\|gb\|EAS33669.1\| hypothetical protein CIMG_04693 [Coccidioides immitis RS], gi\|119189291\|r... gi\|240111292 - gi\|240111292\|gb\|EER29445.1\| 40S ribosomal protein S13, putative [Coccidioides posadasii C735 delta S...	2.0E-60	[1..151]	[1..151]
gi\|54609309, gi\|... - gi\|54609309\|gb\|AAV34870.1\| ribosomal protein S13 [Bombyx mori], gi\|148298648\|ref\|NP_001091754.1\| rib...	2.0E-60	[1..151]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI GVILRDSHGV  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.585027
Match:	PF08069.3
Description:	No description for PF08069.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.677	0.217	structural constituent of ribosome	a.4.1	Homeodomain-like
View	Download	0.591	0.031	structural constituent of ribosome	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.630	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.602	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.574	N/A	N/A	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [61-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK HLERNRKDKD AKFRLILIES  60
   61 RIHRLARYYK TKRVLPPNWK YESSTASALV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1yshE
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits