YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55627942
Organism:	Pan troglodytes
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55627942.

Description	E-value	Query Range	Subject Range
gi\|60653547, gi\|... - gi\|60653547\|gb\|AAX29467.1\| colipase pancreatic [synthetic construct], gi\|60653545\|gb\|AAX29466.1\| col...	4.0E-45	[1..112]	[1..112]
gi\|109070883 - gi\|109070883\|ref\|XP_001116700.1\| PREDICTED: similar to Colipase precursor [Macaca mulatta]	3.0E-43	[1..108]	[1..108]
gi\|54632792 - gi\|54632792\|gb\|AAV35728.1\| pancreatic colipase preproprotein [Homo sapiens]	4.0E-43	[4..112]	[1..109]
COLA_HORSE - Colipase A (Fragment) OS=Equus caballus GN=CLPS1 PE=1 SV=2	2.0E-41	[7..112]	[1..106]
gi\|76650030 - gi\|76650030\|ref\|XP_604282.2\| PREDICTED: similar to Colipase precursor [Bos taurus]	7.0E-41	[19..110]	[19..110]
gi\|12858995 - gi\|12858995\|dbj\|BAB31505.1\| unnamed protein product [Mus musculus]	2.0E-39	[16..112]	[17..113]
COL_PIG - Colipase OS=Sus scrofa GN=CLPS PE=1 SV=3	3.0E-39	[1..110]	[1..110]
gi\|203503 - gi\|203503\|gb\|AAA40943.1\| colipase	4.0E-39	[16..112]	[16..112]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKILILLLV ALSVAYAAPG PRGIIINLEN GELCMNSAQC KSNCCQHSSA LGLARCTSMA  60
   61 SENSECSVKT LYGIYYKCPC ERGLTCEGDK TIVGSITNTN FGICHDAGRS KQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1ethB
Description:	(Pro)colipase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits