YRC Public Data Repository - Protein Structure Prediction

Protein:	RL18_HALMA
Organism:	Haloarcula marismortui
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL18_HALMA.

Description	E-value	Query Range	Subject Range
RL18_HALSA - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl... RL18_HALS3 - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18 PE=... RL18_HALSA - 50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3	227.0	[0..1]	[183..1]
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2	224.0	[0..2]	[186..11]
gi\|44966788 - gi\|44966788\|gb\|AAS49559.1\| ribosomal protein L5 [Latimeria chalumnae]	224.0	[0..2]	[186..1]
gi\|112907480 - gi\|112907480\|gb\|ABI26260.1\| ribosomal protein L5 [Dicentrarchus labrax]	221.0	[0..2]	[186..11]
RL18_HALMA - (P14123) 50S ribosomal protein L18P (Hmal18) (Hl12) gi\|88192388, gi\|... - gi\|88192388\|pdb\|2B9P\|S Chain S, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co... gi\|28373733 - gi\|28373733\|pdb\|1ML5\|QQ Chain q, Structure Of The E. Coli Ribosomal Termination Complex With Release... gi\|66361033\|pdb\|... - Chain Q, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	221.0	[0..2]	[187..1]
gi\|114557920 - gi\|114557920\|ref\|XP_513564.2\| PREDICTED: similar to MSTP030 [Pan troglodytes]	220.0	[0..2]	[185..120]
gi\|15293871 - gi\|15293871\|gb\|AAK95128.1\|AF401556_1 ribosomal protein L5a [Ictalurus punctatus]	220.0	[0..2]	[186..11]
gi\|148230833, gi... - gi\|27503217\|gb\|AAH42258.1\| Rpl5-b protein [Xenopus laevis], gi\|148230833\|ref\|NP_001079437.1\| similar...	219.0	[0..2]	[186..11]
gi\|40642990 - gi\|40642990\|emb\|CAD91421.1\| ribosomal protein L5 [Crassostrea gigas]	219.0	[0..2]	[184..11]
gi\|50344868, gi\|... - gi\|50344868\|ref\|NP_001002106.1\| ribosomal protein L5 [Danio rerio], gi\|49902965\|gb\|AAH76208.1\| Ribos...	219.0	[0..2]	[186..11]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGPRYKVP MRRRREARTD YHQRLRLLKS GKPRLVARKS NKHVRAQLVT LGPNGDDTLA  60
   61 SAHSSDLAEY GWEAPTGNMP SAYLTGLLAG LRAQEAGVEE AVLDIGLNSP TPGSKVFAIQ 120
  121 EGAIDAGLDI PHNDDVLADW QRTRGAHIAE YDEQLEEPLY SGDFDAADLP EHFDELRETL 180
  181 LDGDIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1s72N
Description:	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits