YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55741690
Organism:	SPECIES UNKNOWN
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55741690.

Description	E-value	Query Range	Subject Range
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	114.0	[0..1]	[99..1]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	109.0	[0..1]	[99..1]
IL8_FELCA - Interleukin-8 OS=Felis catus GN=CXCL8 PE=3 SV=1	106.0	[0..1]	[100..1]
CCL3_PANTR - C-C motif chemokine 3 OS=Pan troglodytes GN=CCL3 PE=3 SV=1	105.0	[0..3]	[92..1]
IL8_HORSE - Interleukin-8 OS=Equus caballus GN=CXCL8 PE=3 SV=2	105.0	[0..1]	[101..1]
gi\|539709 - gi\|539709\|pir\|\|JN0841 interleukin-8 - dog	105.0	[0..1]	[95..1]
CCL3L1, CCL3L3 - chemokine (C-C motif) ligand 3-like 3, chemokine (C-C motif) ligand 3-like 1	105.0	[0..3]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKLAVALL AAFVLSAALC EAAVLSRVSS ELRCQCIKTH STPFHPKYIK ELRVIDSGPH  60
   61 CENSEIIVKL FNGNEVCLDP KEKWVQKVVQ IFLKKAEKQD P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1iklA
Description:	NMR STUDY OF MONOMERIC HUMAN INTERLEUKIN-8 (MINIMIZED AVERAGE STRUCTURE)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits