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View Structure Prediction Details

Protein: gi|285199
Organism: Papio sp.
Length: 83 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|285199.

Description E-value Query
Range		 Subject
Range
APOC1_RAT - Apolipoprotein C-I OS=Rattus norvegicus GN=Apoc1 PE=3 SV=1
 120.0 [0..1] [80..1]
tr|M0R547|M0R547_RAT - Protein LOC100910181 OS=Rattus norvegicus GN=LOC100910181 PE=4 SV=1
APOC1_MOUSE - Apolipoprotein C-I OS=Mus musculus GN=Apoc1 PE=1 SV=1
 118.0 [0..1] [80..1]
gi|68398041 - gi|68398041|ref|XP_699235.1| PREDICTED: hypothetical protein [Danio rerio]
 116.0 [0..1] [79..38]
gi|178834 - gi|178834|gb|AAA51762.1| apolipoprotein CI [Homo sapiens]
 107.0 [0..15] [83..1]
gi|61370995, gi|... - gi|61371003|gb|AAX43591.1| apolipoprotein C-I [synthetic construct], gi|61370995|gb|AAX43590.1| apol...
 106.0 [0..1] [83..1]
APO1B_PANTR - Apolipoprotein C-I, basic form OS=Pan troglodytes GN=APOC1B PE=1 SV=1
 104.0 [0..1] [83..1]
gi|47212683 - gi|47212683|emb|CAF95503.1| unnamed protein product [Tetraodon nigroviridis]
 103.0 [0..1] [79..1]

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Predicted Domain #1
Region A:
Residues: [1-83] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFLSLPVL VVVLSMVLEG PAPVQGAPDV SSALDKLKEF GNTLEDKAWE VINRIKQSEF  60
   61 PAKTRDWFSE TFRKVKEKLK INS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1iojA
Description: HUMAN APOLIPOPROTEIN C-I, NMR, 18 STRUCTURES
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle