YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29415711
Organism:	CRIM plasmid pKD16
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29415711.

Description	E-value	Query Range	Subject Range
gi\|46561786 - gi\|46561786\|gb\|AAT01110.1\| transcriptional regulator AraC [rpL23-fusion expression vector pGFP] gi\|110227283 - gi\|110227283\|gb\|ABG56581.1\| araC [Shuttle vector pMQ78] gi\|46561782 - gi\|46561782\|gb\|AAT01107.1\| transcriptional regulator AraC [rpL23-fusion expression vector pmIL-6] gi\|110227290 - gi\|110227290\|gb\|ABG56587.1\| AraC [Shuttle vector pMQ79] gi\|46561794 - gi\|46561794\|gb\|AAT01116.1\| transcriptional regulator AraC [rpL23-fusion expression vector pSA] gi\|110227271 - gi\|110227271\|gb\|ABG56571.1\| AraC [Shuttle vector pMQ72] gi\|46561789 - gi\|46561789\|gb\|AAT01112.1\| transcriptional regulator AraC [Expression vector prpL23] gi\|110227277 - gi\|110227277\|gb\|ABG56576.1\| AraC [Shuttle vector pMQ91] gi\|110227260 - gi\|110227260\|gb\|ABG56562.1\| AraC [Shuttle vector pMQ70] gi\|110227266 - gi\|110227266\|gb\|ABG56567.1\| AraC [Shuttle vector pMQ71] gi\|46561778 - gi\|46561778\|gb\|AAT01104.1\| transcriptional regulator AraC [rpL23-fusion expression vector pyEF1A] gi\|73761251 - gi\|73761251\|gb\|AAZ83196.1\| AraC [Cloning vector pBMTB-6] gi\|73761257 - gi\|73761257\|gb\|AAZ83201.1\| AraC [Cloning vector pBTB-6] gi\|22074790 - gi\|22074790\|gb\|AAM63382.1\| transcriptional regulator AraC [Broad host range vector pMLBAD] gi\|110227308 - gi\|110227308\|gb\|ABG56602.1\| AraC [Shuttle vector pMQ97] gi\|46561798 - gi\|46561798\|gb\|AAT01119.1\| transcriptional regulator AraC [rpL23-fusion expression vector pScFV] gi\|110227296 - gi\|110227296\|gb\|ABG56592.1\| AraC [Shuttle vector pMQ80] gi\|110227302 - gi\|110227302\|gb\|ABG56597.1\| AraC [Shuttle vector pMQ95] gi\|254037480, gi... - gi\|254037480\|ref\|ZP_04871557.1\| arabinose operon regulatory protein [Escherichia sp. 1_1_43], gi\|226... gi\|69048160 - gi\|69048160\|gb\|AAY99700.1\| AraC [Broad host range vector pBMTB-1] gi\|69048180 - gi\|69048180\|gb\|AAY99704.1\| AraC [Broad host range vector pBMTB-2] gi\|92429682 - gi\|92429682\|gb\|ABE77210.1\| AraC [Tn7 delivery vector pGRG36] gi\|69048351 - gi\|69048351\|gb\|AAY99728.1\| AraC [Broad host range vector pBTB-4] gi\|69048362 - gi\|69048362\|gb\|AAY99731.1\| AraC [Broad host range vector pBTB-5] gi\|69048321 - gi\|69048321\|gb\|AAY99722.1\| AraC [Broad host range vector pBTB-2] gi\|69048331 - gi\|69048331\|gb\|AAY99725.1\| AraC [Broad host range vector pBTB-3] gi\|69048299 - gi\|69048299\|gb\|AAY99716.1\| AraC [Broad host range vector pBMTB-5] gi\|69048311 - gi\|69048311\|gb\|AAY99719.1\| AraC [Broad host range vector pBTB-1] gi\|69048217 - gi\|69048217\|gb\|AAY99708.1\| AraC [Broad host range vector pBMTB-3] gi\|69048283 - gi\|69048283\|gb\|AAY99712.1\| AraC [Broad host range vector pBMTB-4] gi\|189370804, gi... - gi\|189405305\|ref\|ZP_02814596.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189404383, gi... - gi\|189404383\|ref\|ZP_02789066.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189403571, gi... - gi\|189403571\|ref\|ZP_02796293.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189357017, gi... - gi\|189402188\|ref\|ZP_02780677.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189010427, gi... - gi\|189010427\|ref\|ZP_02806954.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|188025161, gi... - gi\|188025161\|ref\|ZP_02776450.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|187767758, gi... - gi\|187776337\|ref\|ZP_02801913.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|211909024 - gi\|211909024\|gb\|ACJ12805.1\| AraC [Suicide vector pMQ200] gi\|211909019 - gi\|211909019\|gb\|ACJ12801.1\| AraC [Shuttle vector pMQ175] gi\|138754319 - gi\|138754319\|emb\|CAL59724.1\| transcriptional regulator AraC [Cloning vector pSC101BADgbaA-ISceI(amp)... gi\|171194030 - gi\|171194030\|gb\|ACB45214.1\| AraC [Cloning vector pMQ125] gi\|171194024 - gi\|171194024\|gb\|ACB45209.1\| AraC [Cloning vector pMQ124] gi\|217320407, gi... - gi\|217324186\|ref\|ZP_03440270.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. T... gi\|209157126, gi... - gi\|209395726\|ref\|YP_002268672.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. ... gi\|208820409, gi... - gi\|208820409\|ref\|ZP_03260729.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|208814057, gi... - gi\|208814057\|ref\|ZP_03255386.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|208726169, gi... - gi\|208806368\|ref\|ZP_03248705.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|194439416, gi... - gi\|194439416\|ref\|ZP_03071493.1\| arabinose operon regulatory protein [Escherichia coli 101-1], gi\|194... gi\|194429372, gi... - gi\|194429372\|ref\|ZP_03061897.1\| arabinose operon regulatory protein [Escherichia coli B171], gi\|1944... gi\|193070820, gi... - gi\|193070820\|ref\|ZP_03051753.1\| arabinose operon regulatory protein [Escherichia coli E110019], gi\|1... gi\|193065896, gi... - gi\|193065896\|ref\|ZP_03046957.1\| arabinose operon regulatory protein [Escherichia coli E22], gi\|19292... gi\|191167786, gi... - gi\|191167786\|ref\|ZP_03029593.1\| arabinose operon regulatory protein [Escherichia coli B7A], gi\|19090... gi\|189406124, gi... - gi\|189406124\|ref\|ZP_02826496.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E...	218.0	[0..1]	[292..18]
gi\|110804128, gi... - gi\|110804128\|ref\|YP_687648.1\| DNA-binding transcriptional regulator AraC [Shigella flexneri 5 str. 8...	218.0	[0..1]	[292..1]
gi\|56383143, gi\|... - gi\|56479592\|ref\|NP_706017.2\| DNA-binding transcriptional regulator AraC [Shigella flexneri 2a str. 3... gi\|30061629, gi\|... - gi\|30061629\|ref\|NP_835800.1\| DNA-binding transcriptional regulator AraC [Shigella flexneri 2a str. 2...	218.0	[0..1]	[292..1]
gi\|15149223 - gi\|15149223\|gb\|AAK85197.1\| AraC [Expression vector pBGH] gi\|75189166 - gi\|75189166\|ref\|ZP_00702433.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|83585212 - gi\|83585212\|ref\|ZP_00923862.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75209414 - gi\|75209414\|ref\|ZP_00709646.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75194283 - gi\|75194283\|ref\|ZP_00704353.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75234303 - gi\|75234303\|ref\|ZP_00718681.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75229085 - gi\|75229085\|ref\|ZP_00715665.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75511712 - gi\|75511712\|ref\|ZP_00734350.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75256062 - gi\|75256062\|ref\|ZP_00727775.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi...	216.0	[0..1]	[292..4]
gi\|75175622 - gi\|75175622\|ref\|ZP_00695830.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Shigella b...	216.0	[0..1]	[292..4]
gi\|73854158, gi\|... - gi\|74310681\|ref\|YP_309100.1\| DNA-binding transcriptional regulator AraC [Shigella sonnei Ss046], gi\|...	216.0	[0..1]	[292..1]
gi\|218425504, gi... - gi\|218687940\|ref\|YP_002396152.1\| DNA-binding transcriptional regulator AraC [Escherichia coli ED1a],... gi\|227837864, gi... - gi\|227885035\|ref\|ZP_04002840.1\| DNA-binding transcriptional regulator AraC [Escherichia coli 83972],... gi\|117622352, gi... - gi\|117622352\|ref\|YP_851265.1\| DNA-binding transcriptional regulator AraC [Escherichia coli APEC O1],... gi\|91209124, gi\|... - gi\|91209124\|ref\|YP_539110.1\| DNA-binding transcriptional regulator AraC [Escherichia coli UTI89], gi...	208.0	[0..1]	[280..18]
ARAC_CITFR - Arabinose operon regulatory protein OS=Citrobacter freundii GN=araC PE=3 SV=1	205.0	[0..1]	[280..1]
gi\|75236939 - gi\|75236939\|ref\|ZP_00720998.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi...	205.0	[0..1]	[280..4]
gi\|218363772, gi... - gi\|218557003\|ref\|YP_002389916.1\| DNA-binding transcriptional regulator AraC [Escherichia coli S88], ... gi\|26106386, gi\|... - gi\|26245989\|ref\|NP_752028.1\| DNA-binding transcriptional regulator AraC [Escherichia coli CFT073], g...	204.0	[0..1]	[280..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAQNDPLL PGYSFNAHLV AGLTPIEANG YLDFFIDRPL GMKGYILNLT IRGQGVVKNQ  60
   61 GREFVCRPGD ILLFPPGEIH HYGRHPEARE WYHQWVYFRP RAYWHEWLNW PSIFANTGFF 120
  121 RPDEAHQPHF SDLFGQIINA GQGEGRYSEL LAINLLEQLL LRRMEAINES L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1xjaA
Description:	Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [172-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPPMDNRVRE ACQYISDHLA DSNFDIASVA QHVCLSPSRL SHLFRQQLGI SVLSWREDQR  60
   61 ISQAKLLLST TRMPIATVGR NVGFDDQLYF SRVFKKCTGA SPSEFRAGCE EKVNDVAVKL 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1xs9A
Description:	A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits