YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCS1_PONPY
Organism:	Pongo pygmaeus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCS1_PONPY.

Description	E-value	Query Range	Subject Range
gi\|109039192 - gi\|109039192\|ref\|XP_001085058.1\| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...	178.0	[0..1]	[102..285]
gi\|50754117 - gi\|50754117\|ref\|XP_414251.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	171.0	[0..1]	[101..100]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	168.0	[0..1]	[102..1]
gi\|16905460 - gi\|16905460\|gb\|AAL31361.1\|L38852_1 signal peptidase 12kDa subunit [Homo sapiens]	167.0	[0..1]	[102..1]
gi\|73985289, gi\|... - gi\|73985289\|ref\|XP_858931.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	167.0	[0..1]	[102..1]
SP12_MOUSE, SPCS... - Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=2, (Q9D958) Microsomal signal pe...	166.0	[0..1]	[102..1]
gi\|74315930, gi\|... - gi\|74315930\|ref\|NP_001028274.1\| signal peptidase complex subunit 1 homolog [Danio rerio], gi\|7153404...	147.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEHLSSLPT QMDYKGQKLA EQMFQGIILF SAIVGFIYGY VAEQFGWTVY IVMAGFAFSC  60
   61 LLTLPPWPIY RRHPLKWLPV QESSTDDKKP GERKIKRHAK NN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.327902
Match:	PF06645.4
Description:	No description for PF06645.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits