YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|69380
Organism:	Sus scrofa domesticus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|69380.

Description	E-value	Query Range	Subject Range
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	167.0	[0..1]	[114..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	167.0	[0..1]	[114..1]
CCK - cholecystokinin gi\|157927968, gi... - gi\|60656149\|gb\|AAX32638.1\| cholecystokinin [synthetic construct], gi\|60656147\|gb\|AAX32637.1\| cholecy...	167.0	[0..1]	[114..1]
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3	167.0	[0..1]	[114..1]
CCKN_BOVIN - Cholecystokinin OS=Bos taurus GN=CCK PE=1 SV=2	166.0	[0..1]	[114..1]
CCKN_MACFA - Cholecystokinin OS=Macaca fascicularis GN=CCK PE=1 SV=1	162.0	[0..1]	[114..1]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	161.0	[0..1]	[114..1]
CCKN_RAT - Cholecystokinin OS=Rattus norvegicus GN=Cck PE=1 SV=1	160.0	[0..1]	[114..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2	157.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGLCLCVL MAVLAAGTLA QPVPPADSAV PGAQEEEAHR RQLRAVQKVD GESRAHLGAL  60
   61 LARYIQQARK APSGRVSMIK NLQSLDPSHR ISDRDYMGWM DFGRRSAEEY EYTS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.119186
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits