YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11277547, gi\|...
Organism:	Pseudomonas aeruginosa
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11277547, gi|....

Description	E-value	Query Range	Subject Range
gi\|150964555, gi... - gi\|94415031\|ref\|ZP_01294880.1\| hypothetical protein PaerP_01003139 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-34	[1..159]	[1..159]
gi\|49081072 - gi\|49081072\|gb\|AAT50090.1\| PA1464 [synthetic construct]	1.0E-34	[1..159]	[1..159]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	1.0E-33	[1..159]	[1..163]
gi\|166861384, gi... - gi\|167034896\|ref\|YP_001670127.1\| CheW protein [Pseudomonas putida GB-1], gi\|166861384\|gb\|ABY99791.1\|... tr\|E4RC37\|E4RC37... - CheW OS=Pseudomonas putida (strain BIRD-1) GN=cheW PE=4 SV=1 gi\|148510832, gi... - gi\|82738751\|ref\|ZP_00901576.1\| CheW-like protein [Pseudomonas putida F1], gi\|82714143\|gb\|EAP49232.1\|... gi\|24986052, gi\|... - gi\|26991022\|ref\|NP_746447.1\| purine-binding chemotaxis protein CheW [Pseudomonas putida KT2440], gi\|... gi\|2853606 - gi\|2853606\|gb\|AAC08070.1\| CheW [Pseudomonas putida] gi\|170722821, gi... - gi\|170722821\|ref\|YP_001750509.1\| CheW protein [Pseudomonas putida W619], gi\|169760824\|gb\|ACA74140.1\|...	7.0E-33	[1..159]	[1..159]
gi\|95111779 - gi\|95111779\|emb\|CAK16503.1\| purine-binding chemotaxis protein CheW [Pseudomonas entomophila L48] gi\|95111779, gi\|... - gi\|95111779\|emb\|CAK16503.1\| purine-binding chemotaxis protein CheW [Pseudomonas entomophila L48], gi...	7.0E-33	[1..159]	[1..159]
gi\|23471916, gi\|... - gi\|66046657\|ref\|YP_236498.1\| CheW-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325736... gi\|71734681, gi\|... - gi\|71734681\|ref\|YP_275512.1\| chemotaxis protein CheW [Pseudomonas syringae pv. phaseolicola 1448A], ...	9.0E-33	[1..159]	[1..159]
gi\|83647830, gi\|... - gi\|83647830\|ref\|YP_436265.1\| chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396], ...	3.0E-32	[7..159]	[9..161]
gi\|116184400, gi... - gi\|75854966\|ref\|ZP_00762633.1\| COG0835: Chemotaxis signal transduction protein [Vibrio sp. Ex25], gi... gi\|91191655, gi\|... - gi\|91223569\|ref\|ZP_01258834.1\| chemotaxis protein CheW [Vibrio alginolyticus 12G01], gi\|91191655\|gb\|...	3.0E-32	[3..159]	[8..164]
gi\|28807218, gi\|... - gi\|28898999\|ref\|NP_798604.1\| chemotaxis protein CheW [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|28807218, gi\|... - gi\|6952820\|gb\|AAF32421.1\| chemotaxis protein CheW [Vibrio parahaemolyticus], gi\|28807218\|dbj\|BAC6048... gi\|156527000, gi... - gi\|156975406\|ref\|YP_001446313.1\| hypothetical protein VIBHAR_03137 [Vibrio harveyi ATCC BAA-1116], g... gi\|153836944, gi... - gi\|153836944\|ref\|ZP_01989611.1\| chemotaxis protein CheW [Vibrio parahaemolyticus AQ3810], gi\|1497497...	4.0E-32	[3..159]	[8..164]
gi\|84377202, gi\|... - gi\|84388135\|ref\|ZP_00991031.1\| Chemotaxis signal transduction protein [Vibrio splendidus 12B01], gi\|...	4.0E-32	[3..159]	[8..164]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATAQSAE DPILQWVTFR LDNESYGINV MQVQEVLRYT EIAPVPGAPS YVLGIINLRG  60
   61 NVVTVIDTRQ RFGLDPAPVS DNTRIVIIEA DKQVVGILVD SVAEVVYLKQ SEIETAPNVG 120
  121 NEESAKFIQG VCNKNGELLI LVELDKMMTE EEWSELGSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits