YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57718
Organism:	Rattus rattus
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57718.

Description	E-value	Query Range	Subject Range
gi\|2920833 - gi\|2920833\|gb\|AAC04625.1\| ribosomal protein S2 [Rattus norvegicus]	467.0	[0..47]	[293..4]
gi\|82918273, gi\|... - gi\|94383782\|ref\|XP_997963.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|82918273\|ref\|XP_9071...	466.0	[0..54]	[293..54]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	464.0	[0..54]	[293..54]
gi\|73962610 - gi\|73962610\|ref\|XP_850151.1\| PREDICTED: similar to 40S ribosomal protein S2 isoform 2 [Canis familia...	464.0	[0..54]	[293..60]
RPS2 - ribosomal protein S2 gi\|109108083, gi... - gi\|109108083\|ref\|XP_001095648.1\| PREDICTED: similar to ribosomal protein S2 isoform 5 [Macaca mulatt... gi\|114660380, gi... - gi\|55644549\|ref\|XP_511195.1\| PREDICTED: similar to 40S ribosomal protein S2 (S4) (LLRep3 protein) is... gi\|123997961, gi... - gi\|60656433\|gb\|AAX32780.1\| ribosomal protein S2 [synthetic construct], gi\|123997961\|gb\|ABM86582.1\| r...	463.0	[0..54]	[293..54]
gi\|114660388 - gi\|114660388\|ref\|XP_001161133.1\| PREDICTED: similar to 40S ribosomal protein S2 (S4) (LLRep3 protein...	463.0	[0..54]	[293..32]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDAGAAGG PGGPGGPGLG GRGGFRGGFG SGLRGRGRGR GRGRGRGRGA RGGKAEDKEW  60
   61 IPVTKLGRLV KDMKIKSLEE IYLFSLPIKE SEIIDFFLGA SLKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVLKIMPVQK QTRAGQRTRF KAFVAIGDYN GHVGLGVKCS KEVATAIRGA IILAKLSIVP  60
   61 VRRGYWGNKI GKPHTVPCKV TGRCGSVLVR LIPAPRGTGI VSAPVPKKLL MMAGIDDCYT 120
  121 SARGCTATLG NFAKATFDAI SKTYSYLTPD LWKETVFTKS PYQEFTDHLV KTHTRVSVQR 180
  181 TQAPAVATT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1s1hE
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits