YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760053
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760053.

Description	E-value	Query Range	Subject Range
gi\|197362759, gi... - gi\|197362759\|ref\|YP_002142396.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|56413836, gi\|... - gi\|56413836\|ref\|YP_150911.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serova...	2.0E-66	[1..403]	[1..403]
gi\|42524754, gi\|... - gi\|42524754\|ref\|NP_970134.1\| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100], gi\|3957...	7.0E-66	[2..403]	[6..426]
gi\|39995527, gi\|... - gi\|39995527\|ref\|NP_951478.1\| flagellar hook protein FlgE [Geobacter sulfurreducens PCA], gi\|39982290...	8.0E-65	[2..403]	[6..418]
gi\|36785270, gi\|... - gi\|37525841\|ref\|NP_929185.1\| flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii ...	1.0E-64	[1..403]	[1..404]
gi\|24112485, gi\|... - gi\|24112485\|ref\|NP_706995.1\| flagellar hook protein [Shigella flexneri 2a str. 301], gi\|24051371\|gb\|...	4.0E-64	[1..403]	[241..642]
gi\|78224295, gi\|... - gi\|78224295\|ref\|YP_386042.1\| hypothetical protein Gmet_3103 [Geobacter metallireducens GS-15], gi\|78...	5.0E-64	[2..403]	[6..418]
gi\|227836770, gi... - gi\|227886566\|ref\|ZP_04004371.1\| flagellar hook protein FlgE [Escherichia coli 83972], gi\|227836770\|g... gi\|26107617, gi\|... - gi\|26247216\|ref\|NP_753256.1\| flagellar hook protein FlgE [Escherichia coli CFT073], gi\|26107617\|gb\|A...	1.0E-63	[1..403]	[1..401]
gi\|194432446, gi... - gi\|83570478\|ref\|ZP_00921922.1\| COG1749: Flagellar hook protein FlgE [Shigella dysenteriae 1012], gi\|...	2.0E-63	[1..403]	[1..401]
gi\|209157387, gi... - gi\|209395987\|ref\|YP_002269922.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4115],... gi\|208729025, gi... - gi\|208809224\|ref\|ZP_03251561.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4206], ... gi\|195935466 - gi\|195935466\|ref\|ZP_03080848.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4024] gi\|208822570, gi... - gi\|208822570\|ref\|ZP_03262889.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4042], ... gi\|208814886, gi... - gi\|208814886\|ref\|ZP_03256065.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4045], ... gi\|188999079, gi... - gi\|188999079\|gb\|EDU68065.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|168773921, gi... - gi\|187770405\|gb\|EDU34249.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|209773384, gi... - pir\|\|B85670 flagellar biosynthesis, hook protein [imported] - Escherichia coli (strain O157:H7, subs... gi\|189375951, gi... - gi\|189375951\|gb\|EDU94367.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|189370482, gi... - gi\|189370482\|gb\|EDU88898.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|15801193, gi\|... - gi\|15801193\|ref\|NP_287210.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|168747148, gi... - gi\|188018069\|gb\|EDU56191.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|13360918, gi\|... - gi\|15830708\|ref\|NP_309481.1\| flagellar hook protein [Escherichia coli O157:H7], gi\|13360918\|dbj\|BAB3... gi\|13360918, gi\|... - gi\|15830708\|ref\|NP_309481.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|168767735, gi... - gi\|189363151\|gb\|EDU81570.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168758631, gi... - gi\|189354568\|gb\|EDU72987.1\| flagellar hook protein FlgE [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|254792458, gi... - gi\|254792458\|ref\|YP_003077295.1\| flagellar hook protein [Escherichia coli O157:H7 str. TW14359], gi\|...	3.0E-63	[1..403]	[1..401]
gi\|74311638, gi\|... - gi\|74311638\|ref\|YP_310057.1\| flagellar hook protein FlgE [Shigella sonnei Ss046], gi\|73855115\|gb\|AAZ... gi\|75257512, gi\|... - gi\|75257512\|ref\|ZP_00729015.1\| COG1749: Flagellar hook protein FlgE [Escherichia coli E22], gi\|19306... gi\|190901481, gi... - gi\|75228344\|ref\|ZP_00714994.1\| COG1749: Flagellar hook protein FlgE [Escherichia coli B7A], gi\|19116... gi\|75190134, gi\|... - gi\|75190134\|ref\|ZP_00703401.1\| COG1749: Flagellar hook protein FlgE [Escherichia coli E24377A], gi\|1... gi\|209918330, gi... - gi\|209918330\|ref\|YP_002292414.1\| flagellar hook protein FlgE [Escherichia coli SE11], gi\|209911589\|d... gi\|254161182, gi... - gi\|254161182\|ref\|YP_003044290.1\| flagellar hook protein E [Escherichia coli B str. REL606], gi\|25397... gi\|218351342, gi... - gi\|218694610\|ref\|YP_002402277.1\| flagellar hook protein FlgE [Escherichia coli 55989], gi\|218351342\|... gi\|253773900, gi... - gi\|254287990\|ref\|YP_003053738.1\| flagellar hook protein E [Escherichia coli BL21(DE3)], gi\|253977297... gi\|83586390, gi\|... - gi\|83586390\|ref\|ZP_00925024.1\| COG1749: Flagellar hook protein FlgE [Escherichia coli 101-1], gi\|194...	4.0E-63	[1..403]	[1..401]

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Predicted Domain #1

Region A:
Residues: [1-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSQAVSGL NAAATNLDVI GNNIANSATY GFKSGTASFA DMFAGSKVGL GVKVAGITQD  60
   61 FTDGTTTNTG RGLDVAISQN GFFRLVDSNG SVFYSRNGQF KLDENRNLVN MQGMQLTGYP 120
  121 ATGTPPTIQQ GANPAPITIP NTLMAAKSTT TASMQINLNS TDPVPSKTPF SVSDADSYNK 180
  181 KGTVTVYDSQ GNAHDMNVYF VKTKDNEWAV YTHDSSDPAA TAPTTASTTL KFNENGILES 240
  241 GGTVNITTGT INGATAATFS LSFLNSMQQN TGANNIVATN QNGYKPGDLV SYQINNDGTV 300
  301 VGNYSNEQEQ VLGQIVLANF ANNEGLASQG DNVWAATQAS GVALLGTAGS GNFGKLTNGA 360
  361 LEASNVDLSK ELVNMIVAQR NYQSNAQTIK TQDQILNTLV NLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits