YRC Public Data Repository - Protein Structure Prediction

Protein:	LEG1_CRIGR
Organism:	Cricetulus griseus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEG1_CRIGR.

Description	E-value	Query Range	Subject Range
gi\|23342428\|emb\|... - unnamed protein product [Rattus sp.] LEG1_RAT - Galectin-1 OS=Rattus norvegicus GN=Lgals1 PE=1 SV=2	175.0	[0..1]	[135..1]
gi\|109149582 - gi\|109149582\|ref\|XP_001083427.1\| PREDICTED: lectin, galactoside-binding, soluble, 1 (galectin 1) iso...	175.0	[0..1]	[135..1]
LEG1_MOUSE - Galectin-1 OS=Mus musculus GN=Lgals1 PE=1 SV=3	174.0	[0..1]	[135..1]
gi\|30584667, gi\|... - gi\|61369162\|gb\|AAX43294.1\| lectin galactoside-binding soluble 1 [synthetic construct], gi\|61369156\|g...	174.0	[0..1]	[135..1]
LGALS1 - lectin, galactoside-binding, soluble, 1 gi\|61358976, gi\|... - gi\|61358983\|gb\|AAX41650.1\| lectin galactoside-binding soluble 1 [synthetic construct], gi\|61358976\|g... HGNC:6561\|MIM:15... - galactoside-binding, soluble, 1 gi\|114686337, gi... - gi\|114686337\|ref\|XP_001162104.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114...	174.0	[0..1]	[135..1]
LEG1_SHEEP - Galectin-1 OS=Ovis aries GN=LGALS1 PE=1 SV=2	174.0	[0..1]	[135..1]
LEG1_PONPY - Galectin-1 - Pongo pygmaeus (Orangutan) LEG1_PONAB - Galectin-1 OS=Pongo abelii GN=LGALS1 PE=2 SV=3	172.0	[0..1]	[135..1]
LEG1_BOVIN - Galectin-1 OS=Bos taurus GN=LGALS1 PE=1 SV=2	172.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACGLVASNL NLKPGECLKV RGEVAPDAKS FVLNLGKDSN NLCLHFNPRF NAHGDANTIV  60
   61 CNSKDNGAWG TEHREPAFPF QPGSTVEVCI TFDQADLTIK LPDGHEFKFP NRLNMEAINY 120
  121 MAADGDFKIK CVAFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1gzwA
Description:	X-RAY CRYSTAL STRUCTURE OF HUMAN GALECTIN-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits