YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|262060
Organism:	Rattus sp.
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|262060.

Description	E-value	Query Range	Subject Range
GON1_TUPBE - Progonadoliberin-1 OS=Tupaia belangeri GN=GNRH1 PE=3 SV=1	130.0	[0..1]	[92..1]
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2	126.0	[0..3]	[90..1]
gi\|224191, gi\|34... - gi\|34357\|emb\|CAA25526.1\| unnamed protein product [Homo sapiens], gi\|224191\|prf\|\|1011296A luliberin p...	126.0	[0..1]	[92..1]
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	126.0	[0..3]	[90..1]
gi\|61368711, gi\|... - gi\|61368711\|gb\|AAX43225.1\| gonadotropin-releasing hormone 1 [synthetic construct], gi\|60829470\|gb\|AA...	124.0	[0..1]	[92..1]
gi\|114619319, gi... - gi\|114619319\|ref\|XP_001160489.1\| PREDICTED: gonadotropin-releasing hormone 1 isoform 2 [Pan troglody...	123.0	[0..1]	[92..1]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	121.0	[0..3]	[90..1]
gi\|109733046, gi... - gi\|109733857\|gb\|AAI16898.1\| Gnrh1 protein [Mus musculus], gi\|109733046\|gb\|AAI16900.1\| Gnrh1 protein ...	119.0	[0..1]	[92..5]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	119.0	[0..3]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METIPKLMAA VVLLTVCLEG CSSQHWSYGL RPGGKRNTEH LVDSFQEMGK EEDQMAEPQN  60
   61 FECTVHWPRS PLRDLRGALE RLIEEEAGQK KM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits