YRC Public Data Repository - Protein Structure Prediction

Protein:	IPKA_CHICK
Organism:	Gallus gallus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPKA_CHICK.

Description	E-value	Query Range	Subject Range
gi\|109479223, gi... - gi\|109479223\|ref\|XP_001075390.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma...	91.0	[0..1]	[67..1]
IPKG_PIG - cAMP-dependent protein kinase inhibitor gamma OS=Sus scrofa GN=PKIG PE=3 SV=1	91.0	[0..1]	[76..1]
CCDS13334.1_1 - null PKIG - protein kinase (cAMP-dependent, catalytic) inhibitor gamma	88.0	[0..1]	[76..1]
gi\|73992487 - gi\|73992487\|ref\|XP_853601.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma [Ca...	88.0	[0..1]	[76..1]
gi\|90076928 - gi\|90076928\|dbj\|BAE88144.1\| unnamed protein product [Macaca fascicularis] gi\|109091867, gi... - gi\|109091873\|ref\|XP_001110061.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma...	87.0	[0..1]	[76..1]
IPKG_MOUSE - cAMP-dependent protein kinase inhibitor gamma OS=Mus musculus GN=Pkig PE=1 SV=1 gi\|23306796, gi\|... - gi\|56789440\|gb\|AAH88108.1\| Protein kinase inhibitor, gamma [Rattus norvegicus], gi\|23618889\|ref\|NP_7...	86.0	[0..1]	[76..1]
gi\|111307175 - gi\|111307175\|gb\|AAI20317.1\| PKIG protein [Bos taurus]	86.0	[0..1]	[76..1]
gi\|118100557, gi... - gi\|50758691\|ref\|XP_417373.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma iso...	85.0	[0..2]	[75..59]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVESTYAD FIASGRTGRR NALHDILVSS PGGNSSELAL KLSELDINKA EGEGDAQRNP  60
   61 SEQTGEAQGE AAKQES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.113509
Match:	PF02827.7
Description:	No description for PF02827.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.607	N/A	N/A	a.65.1	Annexin
View	Download	0.607	N/A	N/A	a.65.1	Annexin
View	Download	0.549	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.531	N/A	N/A	a.65.1	Annexin
View	Download	0.531	N/A	N/A	a.65.1	Annexin
View	Download	0.519	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.498	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.498	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.494	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.492	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.339	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.265	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.226	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.221	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits