YRC Public Data Repository - Protein Structure Prediction

Protein:	SMS_PIG
Organism:	Sus scrofa
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMS_PIG.

Description	E-value	Query Range	Subject Range
SMS_MOUSE - Somatostatin OS=Mus musculus GN=Sst PE=3 SV=1 SMS_RAT - Somatostatin OS=Rattus norvegicus GN=Sst PE=1 SV=1	161.0	[0..1]	[116..1]
SMS_CANLF - Somatostatin OS=Canis lupus familiaris GN=SST PE=3 SV=1	158.0	[0..1]	[116..1]
HGNC:11329\|MIM:1... - null gi\|61354883, gi\|... - gi\|61354883\|gb\|AAX41072.1\| somatostatin [synthetic construct], gi\|60812789\|gb\|AAX36231.1\| somatostat... SST - somatostatin SMS_MACFA - Somatostatin OS=Macaca fascicularis GN=SST PE=3 SV=1	158.0	[0..1]	[116..1]
gi\|60824818, gi\|... - gi\|61365073\|gb\|AAX42649.1\| somatostatin [synthetic construct], gi\|60824818\|gb\|AAX36695.1\| somatostat...	157.0	[0..1]	[116..1]
SMS_BOVIN - Somatostatin OS=Bos taurus GN=SST PE=3 SV=1	157.0	[0..1]	[116..1]
gi\|55233184 - gi\|55233184\|gb\|AAV48555.1\| preprosomatostatin-II [Chitala chitala]	147.0	[0..1]	[116..1]
SMS_CHICK - Somatostatin OS=Gallus gallus GN=SST PE=3 SV=1	146.0	[0..1]	[116..1]
SMS1_PROAN - Somatostatin-1 OS=Protopterus annectens GN=sst1 PE=3 SV=1	143.0	[0..1]	[116..1]
SMS1_PELRI - Somatostatin-1 OS=Pelophylax ridibundus GN=sst1 PE=1 SV=1	141.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCRLQCAL AALSIVLALG GVTGAPSDPR LRQFLQKSLA AAAGKQELAK YFLAELLSEP  60
   61 NQTENDALEP EDLSQAAEQD EMRLELQRSA NSNPAMAPRE RKAGCKNFFW KTFTSC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits