YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55655775
Organism:	Pan troglodytes
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55655775.

Description	E-value	Query Range	Subject Range
gi\|57108786 - gi\|57108786\|ref\|XP_535587.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	9.0E-62	[1..212]	[1..212]
gi\|61355655 - gi\|61355655\|gb\|AAX41162.1\| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti... gi\|54696534, gi\|... - gi\|62897485\|dbj\|BAD96682.1\| mitochondrial ATP synthase, O subunit precursor variant [Homo sapiens], ...	3.0E-60	[1..213]	[1..213]
gi\|61365630, gi\|... - gi\|61365630\|gb\|AAX42738.1\| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti...	6.0E-60	[1..213]	[1..213]
gi\|109065448 - gi\|109065448\|ref\|XP_001090216.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...	8.0E-60	[1..213]	[1..213]
ATPO_PONPY - ATP synthase subunit O, mitochondrial precursor - Pongo pygmaeus (Orangutan) ATPO_PONAB - ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1	2.0E-59	[1..212]	[1..212]
ATPO_BOVIN - ATP synthase O subunit, mitochondrial precursor (EC 3.6.3.14) (Oligomycin sensitivity conferral prot...	3.0E-59	[1..213]	[1..213]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1	8.0E-59	[1..212]	[1..212]
ATPO_MOUSE - ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1	8.0E-59	[1..213]	[1..213]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAVSGLS RQVRCFSTSV VRPFAKLVRP PVQVYGIEGR YATALYSAAS KQNKLEQVEK  60
   61 ELLRVAQILK EPKVAASVLN PYVKRSIKVK SLNDITAKER FSPLTTNLIN LLAENGRLSN 120
  121 TQGVVSAFST MMSVHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2bo5A
Description:	Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEVPCTVTSA SPLEEATLSE LKTVLKSFLS QGQVLKLEAK TDPSILGGMI VRIGEKYVDM  60
   61 SVKTKIQKLG RAMREIV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.954
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits