YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55586611
Organism:	Pan troglodytes
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55586611.

Description	E-value	Query Range	Subject Range
ATIF1_MOUSE, IAT... - (O35143) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial OS=Mus musculus ...	7.0E-30	[1..105]	[1..105]
ATIF1_RAT - ATPase inhibitor, mitochondrial OS=Rattus norvegicus GN=Atpif1 PE=3 SV=2	2.0E-29	[1..106]	[1..106]
CCDS319.1_1 - null gi\|109000135 - gi\|109000135\|ref\|XP_001113002.1\| PREDICTED: ATPase inhibitory factor 1 [Macaca mulatta]	3.0E-28	[1..106]	[1..106]
gi\|57997018 - gi\|57997018\|emb\|CAI46227.1\| hypothetical protein [Homo sapiens]	1.0E-26	[1..106]	[1..107]
gi\|73950105, gi\|... - gi\|73950105\|ref\|XP_865710.1\| PREDICTED: similar to ATPase inhibitor, mitochondrial precursor isoform...	4.0E-26	[1..106]	[1..105]
IATP_PIG, ATIF1_PIG - (Q29307) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial precursor - Sus ...	7.0E-24	[1..106]	[1..106]
ATIF1_BOVIN - ATPase inhibitor, mitochondrial OS=Bos taurus GN=ATPIF1 PE=1 SV=2	9.0E-23	[12..106]	[12..106]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTALAART WLGVWGVRTM QARGFGSDQS ENVDRGAGSI REAGGAFGKR EQAEEERYFR  60
   61 AQSREQLAAL KKHHEEEIVH HKKEIERLQK EIERHKQKIK MLKHDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1gmjA
Description:	F1 ATPase inhibitor, IF1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits