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View Structure Prediction Details

Protein: RPOA_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOA_BACSU.

Description E-value Query
Range
Subject
Range
gi|229500502, gi... - gi|229500502|ref|ZP_04394163.1| DNA-directed RNA polymerase, alpha subunit [Geobacillus sp. Y412MC52...
RPOA_GEOKA - DNA-directed RNA polymerase subunit alpha OS=Geobacillus kaustophilus GN=rpoA PE=3 SV=1
RPOA_GEOKA - DNA-directed RNA polymerase subunit alpha OS=Geobacillus kaustophilus (strain HTA426) GN=rpoA PE=3 S...
409.0 [0..1] [314..1]

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Predicted Domain #1
Region A:
Residues: [1-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIEKPKIE TVEISDDAKF GKFVVEPLER GYGTTLGNSL RRILLSSLPG AAVTSIQIDG  60
   61 VLHEFSTIEG VVEDVTTIIL HIKKLALKIY SDEEKTLEID VQGEGTVTAA DITHDSDVEI 120
  121 LNPDLHIATL GENASFRVRL TAQRGRGYTP ADANKRDDQP IGVIPIDSIY TPVSRVSYQV 180
  181 ENTRVGQVAN YDKLTLDVWT DGSTGPKEAI ALGSKILTEH LNIFVGLTDE AQHAEIMVEK 240
  241 EEDQKEKVLE MTIEELDLSV RSYNCLKRAG INTVQELANK TEEDMMKVRN LGRKSLEEVK 300
  301 AKLEELGLGL RKDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.69897
Match: 1hqmA
Description: DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

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