YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670841, gi\|...
Organism:	Escherichia coli
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670841, gi|....

Description	E-value	Query Range	Subject Range
gi\|53733258 - gi\|53733258\|ref\|ZP_00156265.2\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|145272256, gi... - gi\|145638661\|ref\|ZP_01794270.1\| D-fructose-6-phosphate amidotransferase [Haemophilus influenzae Pitt...	273.0	[0..1]	[239..2]
gi\|53733006 - gi\|53733006\|ref\|ZP_00155431.2\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas...	272.0	[0..1]	[239..2]
GLMS_HAEIN - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Haemophilus influenzae GN=glmS P... GLMS_HAEIN - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Haemophilus influenzae (strain ATC...	272.0	[0..1]	[239..2]
gi\|53729274 - gi\|53729274\|ref\|ZP_00133806.2\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|189916093, gi... - gi\|190150962\|ref\|YP_001969487.1\| Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [A... gi\|126209095, gi... - gi\|126209095\|ref\|YP_001054320.1\| glucosamine--fructose-6-phosphate aminotransferase [Actinobacillus ... gi\|165877168, gi... - gi\|165977067\|ref\|YP_001652660.1\| glucosamine--fructose-6-phosphate aminotransferase [Actinobacillus ...	272.0	[0..1]	[239..2]
gi\|73857722, gi\|... - gi\|74314245\|ref\|YP_312664.1\| D-fructose-6-phosphate amidotransferase [Shigella sonnei Ss046], gi\|738...	272.0	[0..1]	[240..2]
gi\|68057228, gi\|... - gi\|68249029\|ref\|YP_248141.1\| D-fructose-6-phosphate amidotransferase [Haemophilus influenzae 86-028N... gi\|229846515, gi... - gi\|229846515\|ref\|ZP_04466623.1\| D-fructose-6-phosphate amidotransferase [Haemophilus influenzae 7P49...	272.0	[0..1]	[239..2]
gi\|25287308 - pir\|\|G91212 hypothetical protein ECs4671 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15833925, gi\|... - gi\|15833925\|ref\|NP_312698.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli O157:H7], gi\|... gi\|15833925, gi\|... - gi\|15833925\|ref\|NP_312698.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia coli O1...	271.0	[0..1]	[240..2]
gi\|82546110, gi\|... - gi\|82546110\|ref\|YP_410057.1\| D-fructose-6-phosphate amidotransferase [Shigella boydii Sb227], gi\|812...	271.0	[0..1]	[240..2]
gi\|170681402, gi... - gi\|170681402\|ref\|YP_001746059.1\| glutamine-fructose-6-phosphate transaminase (isomerizing) [Escheric... gi\|218372565, gi... - gi\|218702579\|ref\|YP_002410208.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|215267139, gi... - gi\|215489067\|ref\|YP_002331498.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... gi\|226902794, gi... - gi\|237703530\|ref\|ZP_04534011.1\| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia sp.... gi\|218707375, gi... - gi\|218707375\|ref\|YP_002414894.1\| glucosamine--fructose-6-phosphate aminotransferase [Escherichia col... GLMS_SHIFL - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Shigella flexneri GN=glmS PE=3 SV=... gi\|110617101, gi... - gi\|110807553\|ref\|YP_691073.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 5 str. 8401... gi\|24054291, gi\|... - gi\|24115032\|ref\|NP_709542.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 2a str. 301]... gi\|188489293, gi... - gi\|75514205\|ref\|ZP_00736513.1\| COG0449: Glucosamine 6-phosphate synthetase, contains amidotransferas... gi\|30043227, gi\|... - gi\|30064966\|ref\|NP_839137.1\| D-fructose-6-phosphate amidotransferase [Shigella flexneri 2a str. 2457... gi\|91213253, gi\|... - gi\|91213253\|ref\|YP_543239.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli UTI89], gi\|91...	271.0	[0..1]	[240..2]
gi\|115515126, gi... - gi\|117626002\|ref\|YP_859325.1\| D-fructose-6-phosphate amidotransferase [Escherichia coli APEC O1], gi...	271.0	[0..1]	[240..2]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGIVGAIAQR DVAEILLEGL RRLEYRGYDS AGLAVVDAEG HMTRLRRLGK VQMLAQAAEE  60
   61 HPLHGGTGIA HTRWATHGEP SEVNAHPHVS EHIVVVHNGI IENHEPLREE LKARGYTFVS 120
  121 ETDTEVIAHL VNWELKQGGT LREAVLRAIP QLRGAYGTVI MDSRHPDTLL AARSGSPLVI 180
  181 GLGMGENFIA SDQLALLPVT RRFIFLEEGD IAEITRRSVN IFDKTGAEVK RQDIESNLQY 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1jxaA
Description:	"Isomerase domain" of glucosamine 6-phosphate synthase (GLMS); Glucosamine 6-phosphate synthase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.6665721924779	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: