YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7226015, gi\|1...
Organism:	Neisseria meningitidis MC58
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7226015, gi|1....

Description	E-value	Query Range	Subject Range
gi\|11280553 - pir\|\|H81946 probable periplasmic protein NMA0993 [imported] - Neisseria meningitidis (strain Z2491 s... gi\|15793950, gi\|... - gi\|7379696\|emb\|CAB84263.1\| putative periplasmic protein [Neisseria meningitidis Z2491], gi\|218767902...	188.0	[0..1]	[159..1]
gi\|59800812, gi\|... - gi\|59800812\|ref\|YP_207524.1\| hypothetical protein NGO0368 [Neisseria gonorrhoeae FA 1090], gi\|597177... gi\|194098102, gi... - gi\|194098102\|ref\|YP_002001150.1\| Periplasmic protein [Neisseria gonorrhoeae NCCP11945], gi\|193933392...	146.0	[0..34]	[159..1]
gi\|36959033 - gi\|36959033\|gb\|AAQ87458.1\| Hypothetical protein (integral membrane protein) [Rhizobium sp. NGR234]	144.0	[0..1]	[158..2]
gi\|52628356, gi\|... - gi\|52841245\|ref\|YP_095044.1\| hypothetical protein lpg1011 [Legionella pneumophila subsp. pneumophila... gi\|19881007 - gi\|19881007\|gb\|AAM00634.1\| unknown [Legionella pneumophila]	134.0	[0..35]	[157..6]
gi\|213978875 - gi\|213978875\|ref\|ZP_03406134.1\| hypothetical protein Salmonellaentericaenterica_31977 [Salmonella en... gi\|29144790, gi\|... - gi\|29144790\|ref\|NP_808132.1\| hypothetical protein t4554 [Salmonella enterica subsp. enterica serovar... gi\|16505621, gi\|... - gi\|25335615\|pir\|\|AF1066 probable exported protein STY4860 [imported] - Salmonella enterica subsp. en... gi\|16763312 - gi\|16763312\|ref\|NP_458929.1\| hypothetical protein STY4860 [Salmonella enterica subsp. enterica serov...	134.0	[0..3]	[157..4]
gi\|32266219, gi\|... - gi\|32266219\|ref\|NP_860251.1\| hypothetical protein HH0720 [Helicobacter hepaticus ATCC 51449], gi\|322...	133.0	[0..27]	[156..11]
gi\|197365212, gi... - gi\|197365212\|ref\|YP_002144849.1\| hypothetical protein SSPA4015 [Salmonella enterica subsp. enterica ... gi\|56130545, gi\|... - gi\|56416288\|ref\|YP_153363.1\| hypothetical protein SPA4324 [Salmonella enterica subsp. enterica serov...	133.0	[0..3]	[157..4]
gi\|113461801, gi... - gi\|113461801\|ref\|YP_719870.1\| hypothetical protein HS_1665 [Haemophilus somnus 129PT], gi\|112823844\|...	133.0	[0..15]	[159..4]
gi\|54298310, gi\|... - gi\|54298310\|ref\|YP_124679.1\| hypothetical protein lpp2368 [Legionella pneumophila str. Paris], gi\|53...	132.0	[0..35]	[157..6]
gi\|16767749, gi\|... - gi\|16767749\|ref\|NP_463364.1\| hypothetical protein STM4505 [Salmonella typhimurium LT2], gi\|16423071\|... lcl\|NC_016856.1_... - [gene=STM14_5408] [protein=hypothetical protein] [protein_id=YP_005240835.1] [location=4772403..4772...	132.0	[0..3]	[157..4]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHILPLIAA SALCISTASA HPASEPSTQN ETAMTTHTLT SKYSFDETVS RLETAIKSKG  60
   61 MDIFAVIDHQ EAARRNGLTM QPAKVIVFGT PKAGTPLMVK DPAFALQLPL RVLVTETDGK 120
  121 VRAAYTDTRA LIAGSRIGFD EVANTLANAE KLIQKTVGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1q9uA
Description:	Crystal structure of hypothetical protein APC35924 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits