YRC Public Data Repository - Protein Structure Prediction

Protein:	COX5_DICDI
Organism:	Dictyostelium discoideum
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5_DICDI.

Description	E-value	Query Range	Subject Range
COX4_YEAST - Cytochrome c oxidase subunit 4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|190407127 - gi\|190407127\|gb\|EDV10394.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae RM11-1a] gi\|151943629 - gi\|151943629\|gb\|EDN61939.1\| cytochrome c oxidase subunit IV [Saccharomyces cerevisiae YJM789] COX4 - Subunit IV of cytochrome c oxidase, the terminal member of the mitochondrial inner membrane electron...	187.0	[0..1]	[120..37]
gi\|88181275, gi\|... - gi\|88181275\|gb\|EAQ88743.1\| hypothetical protein CHGG_05362 [Chaetomium globosum CBS 148.51], gi\|1161...	184.0	[0..1]	[120..44]
gi\|50293263, gi\|... - gi\|50293263\|ref\|XP_449043.1\| unnamed protein product [Candida glabrata], gi\|49528356\|emb\|CAG62013.1\|... gi\|49528356\|emb\|... - unnamed protein product [Candida glabrata CBS 138]	184.0	[0..1]	[120..36]
COX4_SCHPO - Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... cox4 - cytochrome c oxidase subunit IV	182.0	[0..1]	[120..46]
gi\|83769935 - gi\|83769935\|dbj\|BAE60070.1\| unnamed protein product [Aspergillus oryzae] gi\|169775209 - gi\|169775209\|ref\|XP_001822072.1\| hypothetical protein [Aspergillus oryzae RIB40]	179.0	[0..3]	[118..49]
gi\|44984721, gi\|... - gi\|45198711\|ref\|NP_985740.1\| AFR193Wp [Ashbya gossypii ATCC 10895], gi\|44984721\|gb\|AAS53564.1\| AFR19... gi\|44984721 - gi\|44984721\|gb\|AAS53564.1\| AFR193Wp [Ashbya gossypii ATCC 10895]	179.0	[0..1]	[120..35]
gi\|50306625, gi\|... - gi\|50306625\|ref\|XP_453286.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642420\|emb\|CAH0038... gi\|49642420 - gi\|49642420\|emb\|CAH00382.1\| KLLA0D05082p [Kluyveromyces lactis]	177.0	[0..1]	[119..37]
gi\|70989173, gi\|... - gi\|70989173\|ref\|XP_749436.1\| cytochrome c subunit Vb, putative [Aspergillus fumigatus Af293], gi\|668...	177.0	[0..2]	[116..66]
gi\|119189057, gi... - gi\|90303921\|gb\|EAS33552.1\| hypothetical protein CIMG_04576 [Coccidioides immitis RS], gi\|119189057\|r... gi\|240111380 - gi\|240111380\|gb\|EER29533.1\| Cytochrome c oxidase polypeptide IV, mitochondrial precursor, putative [...	174.0	[0..3]	[120..50]
gi\|115442816, gi... - gi\|115442816\|ref\|XP_001218215.1\| cytochrome c oxidase polypeptide IV, mitochondrial precursor [Asper...	174.0	[0..3]	[116..49]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIVKFLKE LATPSHSMEF FHKPASNSLL DASELNFVRR NIKREDFGHE VLTGAFGTLK  60
   61 SPVIVESIFH SRIVACEGGD GEEHDILFHT VAEKKPTICL DCGQVFKLKH ISSEGEVMYY 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1occF
Description:	Cytochrome c oxidase Subunit F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.856363443933459	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: