YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|279925
Organism: Human immunodeficiency virus 1
Length: 81 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|279925.

Description E-value Query
Range
Subject
Range
gi|16118267 - gi|16118267|gb|AAL12646.1| vpu protein [Human immunodeficiency virus 1]
155.0 [0..1] [81..1]

Back

Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQSLQVLAIV ALVVATIIAI VVWTIVFIEY RKILRQRKID RLINRITERA EDSGNESDGD  60
   61 QEELSALVER GHLAPWDVDD L

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.552842
Match: PF00558.10
Description: No description for PF00558.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle