YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115434750, gi...
Organism: Oryza sativa Japonica Group
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115434750, gi....

Description E-value Query
Range
Subject
Range
gi|84104903, gi|... - gi|84104903|gb|ABC54560.1| ramosa 2 [Zea mays], gi|212723860|ref|NP_001131918.1| ramosa 2 [Zea mays]...
264.0 [0..1] [251..1]

Back

Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSTSNS AISSVVASAV ATTTPGAGSP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA  60
   61 NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ 120
  121 KELDTAHAEL LRYACGEVGI PTALPVTAAP RLAAA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 65.537602
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPGQLAAA VSAGMYGGGR RLGVIDGGGI APPSPHTAGC YYARNNNAGS IGADVAPVLP  60
   61 YASVANWTVN AISTTTTNSG SESIGMDHKE GGDSSM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle