YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94366446, gi\|...
Organism:	Mus musculus
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94366446, gi|....

Description	E-value	Query Range	Subject Range
gi\|149049947, gi... - gi\|27701910\|ref\|XP_214236.1\| PREDICTED: similar to MTH2 protein [Rattus norvegicus], gi\|157823211\|re...	126.0	[0..1]	[170..1]
NUD15_MOUSE - Probable 8-oxo-dGTP diphosphatase NUDT15 OS=Mus musculus GN=Nudt15 PE=1 SV=1	123.0	[0..1]	[170..1]
ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / ... ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii GN=nudF PE=1 SV=1	113.0	[0..6]	[147..36]
gi\|106892416, gi... - gi\|148654328\|ref\|YP_001274533.1\| NUDIX hydrolase [Roseiflexus sp. RS-1], gi\|148566438\|gb\|ABQ88583.1\|...	113.0	[0..7]	[154..16]
gi\|113942320, gi... - gi\|113942320\|ref\|ZP_01428055.1\| NUDIX hydrolase [Herpetosiphon aurantiacus ATCC 23779], gi\|113896038...	111.0	[0..8]	[154..8]
gi\|95134962, gi\|... - gi\|95929061\|ref\|ZP_01311806.1\| NUDIX hydrolase [Desulfuromonas acetoxidans DSM 684], gi\|95134962\|gb\|...	111.0	[0..2]	[144..146]
gi\|71906713, gi\|... - gi\|71906713\|ref\|YP_284300.1\| NUDIX hydrolase [Dechloromonas aromatica RCB], gi\|71846334\|gb\|AAZ45830....	110.0	[0..2]	[146..120]
gi\|87285044, gi\|... - gi\|87312219\|ref\|ZP_01094320.1\| hypothetical protein DSM3645_04865 [Blastopirellula marina DSM 3645],...	110.0	[0..5]	[154..4]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANAEPRRR PGVGVGVVVL SCEHPRCVLL GKRKGSFGAG SFQLPGGHLE FGETWEECAQ  60
   61 RETWEEAGLH LKNVRFASVV NSFVEKENYH YVTILMKGEV DMTHDSEPRN MEPEKNESWE 120
  121 WVPWEEFPPL DQLFWALRCL KEQGYDPFKE DLNHLEGYRG EHLERTTKTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits