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View Structure Prediction Details

Protein: RPA0331
Organism: Rhodopseudomonas palustris CGA009
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA0331.

Description E-value Query
Range
Subject
Range
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2
GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2
228.0 [0..2] [208..1]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTETDGQKD NNQDTAQAAA DPVVSKPYIM PDDPEEGSNE ALVREAADAR DKMLRTLAEM  60
   61 ENLRKRTQKE VADARTYGVT SFARDVLDIA DNLQRALDAV PADARANAEP GLKALIEGVE 120
  121 LTERSLLNAL EKNGVKKFDP KGQKFDPNFQ QAMYEVPDPS VPAGTVVQVV QAGFTIGDRV 180
  181 LRPALVGVAK GGAKAAPSDG GGETGNLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1dkgA
Description: Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle