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View Structure Prediction Details

Protein: RPA1080
Organism: Rhodopseudomonas palustris CGA009
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA1080.

Description E-value Query
Range
Subject
Range
gi|91779503, gi|... - gi|91779503|ref|YP_554711.1| putative hydrolase [Burkholderia xenovorans LB400], gi|91692163|gb|ABE3...
206.0 [0..12] [300..17]

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Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKADPSKGP APACPGPDPA PRRPTRYVVP PGAVDTHAHV IGLPPTYPFV DARSYTPPAA  60
   61 TPESYLAMLD ATGMTYGVVV QVSVHGTDNR LMLETLQAHR DRLKGIAVIP LGLPDKELAA 120
  121 LKDAGVVGLR LNILYGGGIG FERVGEYAAM AKELGWHLQF LIDAKDLVPL APQLGGLPVP 180
  181 FIVDHWGHFP VSRGIDDPGF QTLVSLVRDG AWVKLSGAYR NTVAGFPYLD TIPFARLLHE 240
  241 TAPDRCVWGS DWPHVATWQH MMNVGELLDL LADWVPDAAA RDRVFTDNAY RLYGFTPVQG 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 2qahA
Description: No description for 2qahA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle