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View Structure Prediction Details

Protein: RPA1187
Organism: Rhodopseudomonas palustris CGA009
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA1187.

Description E-value Query
Range
Subject
Range
gi|77655026, gi|... - gi|91975777|ref|YP_568436.1| NUDIX hydrolase [Rhodopseudomonas palustris BisB5], gi|91682233|gb|ABE3...
175.0 [0..8] [221..1]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGTQSASGS ISSADFFDRA QRRLRFDVPA ALTDAGVIPA TGDQGNDQML RTIAQERPIR  60
   61 PAAVLIPVVE HAEPTVLLTM RAAHLNDHAG QIAFPGGKID ATDNSPLDAA LREAEEEIGL 120
  121 DRSFVEPIGY LDVYGTSFGF RILPTVARVR PGFELAINKS EVDDAFEVPL AFLMDPGNHQ 180
  181 LHSKEFRGAQ RSYYAMPFAE RYIWGATAGI LRALYERVCL P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.522879
Match: 1nqyA
Description: Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.49075808737475 bayes_pls_golite062009
binding 0.219596749019403 bayes_pls_golite062009
hydrolase activity 0.214635043348567 bayes_pls_golite062009
nucleic acid binding 0.0715631252684563 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle