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View Structure Prediction Details

Protein: CE40569
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40569.

Description E-value Query
Range
Subject
Range
gi|39580647, gi|... - gi|39580647|emb|CAE61329.1| Hypothetical protein CBG05167 [Caenorhabditis briggsae], gi|187035172|em...
gi|157773563 - gi|157773563|ref|XP_001664847.1| hypothetical protein CBG05167 [Caenorhabditis briggsae AF16]
237.0 [0..5] [256..278]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRDEQVPL LLKRKHVVSG YRPLNQPPSF YFRSAFSSHN EVFNVWTHFI PAIILLFAYL  60
   61 IPEILAPLPR VPVLILQVGI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLLLIASSLA HLMHSRSELD HVFWFLIDFS GIALFGITIG LQRYSSSDDM SLIMKIIYVP  60
   61 LLLVVVLGGQ YFSTCYLFVY KPHYKRRMEL RMGSCFLLAC WLYIPLHYRY QSEGSGGDAA 120
  121 LPLHSRAFQW LVFSGIFMGA HIPERFAPGV FDIVGYGHQL FHLCIDMVAW NLLDAAHIDC 180
  181 SSDEGHVHLP RNIVAVIALF ASIGLIGFNV YRMMQKAITR KYDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle