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View Structure Prediction Details

Protein: CE38945
Organism: Caenorhabditis elegans
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38945.

Description E-value Query
Range
Subject
Range
gi|157751780 - gi|157751780|ref|XP_001679602.1| Hypothetical protein CBG02621 [Caenorhabditis briggsae AF16]
gi|187037261, gi... - gi|39597061|emb|CAE59288.1| Hypothetical protein CBG02621 [Caenorhabditis briggsae], gi|187037261|em...
204.0 [0..13] [216..14]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILFIFFILF ICHVTSFHVT HISDCGTARG CWKLPNGCKD ASDCQTMMTW KHERRHLIIE  60
   61 IESKLVKPDM WLGFGFSKDG LMGNDTVFEC QFPASGSGSV LISHNTAKRN IVLKTASELL 120
  121 IRDGYTEFND GKAMCGGEWI LDNIHLGTEE RTLMHVISSG RYHLFFAYGK MENGEKRMHG 180
  181 MVGKEAPWKS QKQVRFCQRC SSSFANVDSS DEFIKKL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.79
Match: 1d7cA
Description: Cytochrome domain of cellobiose dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle