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View Structure Prediction Details

Protein: CE38699
Organism: Caenorhabditis elegans
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38699.

Description E-value Query
Range
Subject
Range
CE35454 - status:Partially_confirmed UniProt:P90929 protein_id:CAB03204.2
261.0 [0..1] [571..69]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAKIGDGS TSSLPMSSAK PMSTQTSEPQ LPDVPEPNES LHNKTIDEFQ KDQEKCDRLK  60
   61 ARKAELEMRL RQKMQELKDV C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [82-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEGDITGEM PVEINDVVLP GDDFPRLKRR VGTAYSIPDE LIKADKADKM SQLETDVELH  60
   61 RRIVAAASRL ATDKNTNKSV RKKRQKDLQA ARLRLNRLEQ GLQQMRHSAS KPDISSLTSD 120
  121 SSNSWTASNS SGPMLTMAMT KSCPTTPRGS VPDLRNGLDD EKDEFDENVE DRVSRRAPSA 180
  181 ISRHSLSQRY SGVSSSSTSS GSDSMGLGLP PRPTSRKSQQ QQTTPFDDQL DNPMICEIPP 240
  241 PPSSAAAHPL YENVGYRSTS YRSSYRQAHY PTIQDEHTQR KRAQSAHSIS TDNGATGRTS 300
  301 TYSVPLNDAA QKFREYDYDD EEDSTPTMDL PSHLINVRRL TSSISCQAGF ATASLDRRYS 360
  361 KLNGGRLSSG G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [453-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGSDDVVRQN VTTRITTFPV ATSAATVILS GKPYSASELP RFQPPPPVAR VTHMPRGSLP  60
   61 PYSSATMGAQ SPAPPPNGKL PTNPQMEALL SYYKQQQQQQ HQQQSRSAPS QQPKTATIV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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