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View Structure Prediction Details

Protein: egl-13
Organism: Caenorhabditis elegans
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-13.

Description E-value Query
Range
Subject
Range
egl-13 - status:Confirmed UniProt:Q23045 protein_id:AAB04597.2
290.0 [0..1] [422..49]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTPNPAGS PHDASIKSSS STISDHTSTS ATTGISDFPD ILAQTEHGCS VLIDGNHLRE  60
   61 IINSVDTQDG KQDLLSDVIR QLTSIKERL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNDESPVKDD LKEDPDDMSP MLHAGNFDSE MLLRQHELMQ HQQQQMIIAN MLKATQSLPL  60
   61 LFNGGLNYEA ILNNPVLNAT IAGHLPNPLA SNISLLQKSI SAKLAAAGNM QTVEKVETPL 120
  121 NLSKDTPSPT AIPQSPLSGF RLPYSLGTNY GSDGQLFNNC SPNSSGKSTP GNTSVTSEVA 180
  181 TPRPQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 2.13364477654991 bayes_pls_golite062009
DNA binding 1.53868224871484 bayes_pls_golite062009
transcription regulator activity 1.08780465158402 bayes_pls_golite062009
nucleic acid binding 0.818311652354687 bayes_pls_golite062009
transcription factor activity 0.53515597626729 bayes_pls_golite062009
protein binding 0.436111251185035 bayes_pls_golite062009
sequence-specific DNA binding 0.42024807191387 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [276-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSPNHIKRPM NAFMVWARDE RRKILKAYPD MHNSNISKIL GSRWKGMSNS EKQPYYEEQS  60
   61 RLSKLHMEQH PDYRYRPRPK RTCVIDGKKV RVNEYKTIMK TKKDLMWGDE PGFSQPSDLQ 120
  121 MDLASHVNLL NDLTQHHHQS HLLQTAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 2gzkA
Description: No description for 2gzkA was found.

Predicted functions:

Term Confidence Notes
binding 2.13364477654991 bayes_pls_golite062009
DNA binding 1.53868224871484 bayes_pls_golite062009
transcription regulator activity 1.08780465158402 bayes_pls_golite062009
nucleic acid binding 0.818311652354687 bayes_pls_golite062009
transcription factor activity 0.53515597626729 bayes_pls_golite062009
protein binding 0.436111251185035 bayes_pls_golite062009
sequence-specific DNA binding 0.42024807191387 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle