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View Structure Prediction Details

Protein: CE39060
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39060.

Description E-value Query
Range
Subject
Range
gi|81242044, gi|... - gi|82777896|ref|YP_404245.1| putative GTP-binding factor [Shigella dysenteriae Sd197], gi|81242044|g...
200.0 [0..5] [290..83]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMSVQLKKM EAKLRSVDLI IEVHDARIPI TGRNQQFFRH LYAIRPHILV LNKCDLIDMK  60
   61 KYKHQIEDYY YERGVQKVLF TDCKKRLPRA LNDVKLSMLD ALENTPRFNR TVKTEYQAMV 120
  121 VGIPNVGKSS LINAIRTHTL GIKRKAVEAG ARPGVTVRVQ NRVRILDKPP VYIIDTPGVL 180
  181 SPNHRNVEDA MKLAMCDLVL ESHVNLYYLA DFLLFWLNRS EDFSYLELLG INQKFRKNSE 240
  241 KNEENLDISP KQAPIDDIQQ VLALTCAAND FRIQQSIGER WDFDRAAKYF IQLYRNRKFK 300
  301 DSCLDNEHFL YRN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.0
Match: 2hjgA
Description: No description for 2hjgA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle