YRC Public Data Repository - Protein Structure Prediction

Protein:	DTD_STRP6
Organism:	Streptococcus pyogenes serotype M6
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTD_STRP6.

Description	E-value	Query Range	Subject Range
gi\|13622995, gi\|... - gi\|15675771\|ref\|NP_269945.1\| D-tyrosyl-tRNA deacylase [Streptococcus pyogenes M1 GAS], gi\|13622995\|g... DTD_STRPD - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=dtd PE=3 SV=1 DTD_STRPQ - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=dtd PE=3 SV=1 DTD_STRPF - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=dtd PE=3 SV=1 DTD_STRPM - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=dtd PE=3 SV=1 DTD_STRPG - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=dtd PE=3 SV=1 gi\|71911498, gi\|... - gi\|71911498\|ref\|YP_283048.1\| D-tyrosyl-tRNA(Tyr) deacylase [Streptococcus pyogenes MGAS5005], gi\|718... DTD_STRP1 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M1 GN=dtd PE=3 SV=1 DTD_STRPM - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M28 GN=dtd PE=3 SV=1 DTD_STRP3 - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M3 GN=dtd PE=3 SV=1 DTD_STRPY - (P63999) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) DTD_STRP8 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=dtd PE=3 SV=1 DTD_STRP3 - D-aminoacyl-tRNA deacylase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=... DTD_STRP8 - D-tyrosyl-tRNA(Tyr) deacylase OS=Streptococcus pyogenes serotype M18 GN=dtd PE=3 SV=1	242.0	[0..1]	[147..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVLQRVKE ASVSIDGKIA GAINQGLLLL VGVGPDDNAE DLAYAVRKIV NMRIFSDADG  60
   61 KMNQSIQDIK GSILSVSQFT LYADTKKGNR PAFTGAAKPD LARQLYDSFN EQLAEFVPVE 120
  121 RGVFGADMQV SLINDGPVTI ILDTKCH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	1j7gA
Description:	D-Tyr tRNAtyr deacylase, DTD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-aminoacyl-tRNA deacylase activity	3.18961517124283	bayes_pls_golite062009
aminoacyl-tRNA hydrolase activity	1.43757039704554	bayes_pls_golite062009
binding	1.3045500909074	bayes_pls_golite062009
hydrolase activity	1.17585832767276	bayes_pls_golite062009
catalytic activity	1.08855907125654	bayes_pls_golite062009
D-tyrosyl-tRNA(Tyr) deacylase activity	1.06684792922359	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.793555513343425	bayes_pls_golite062009
carboxylesterase activity	0.273763624470875	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: