YRC Public Data Repository - Protein Structure Prediction

Protein:	FABZ_AROAE
Organism:	Aromatoleum aromaticum EbN1
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABZ_AROAE.

Description	E-value	Query Range	Subject Range
gi\|91795797, gi\|... - gi\|92112707\|ref\|YP_572635.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Chromohalobacter salexigens DSM ...	190.0	[0..1]	[145..3]
gi\|213969129, gi... - gi\|213969129\|ref\|ZP_03397268.1\| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Pseudomona... FABZ_PSESM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. tomato (strain DC3... FABZ_PSESM - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. tomato GN=fabZ ...	189.0	[0..1]	[143..2]
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	188.0	[0..1]	[143..2]
gi\|49075978 - gi\|49075978\|gb\|AAT49514.1\| PA3645 [synthetic construct]	186.0	[0..1]	[143..2]
FABZ_PSEE4 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas entomophila (strain L48) GN=fab... gi\|95112171 - gi\|95112171\|emb\|CAK16898.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Pseudomonas en...	186.0	[0..1]	[143..2]
FABZ_SHELP - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella loihica (strain ATCC BAA-1088 / ...	186.0	[0..1]	[145..8]
gi\|84319625, gi\|... - gi\|84319625\|ref\|ZP_00968019.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_PSEAE - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain ATCC 15692 /... gi\|126195721, gi... - gi\|84325651\|ref\|ZP_00973685.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABZ_PSEA7 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain PA7) GN=fabZ... gi\|107103159 - gi\|107103159\|ref\|ZP_01367077.1\| hypothetical protein PaerPA_01004228 [Pseudomonas aeruginosa PACS2] FABZ_PSEAE - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa GN=fabZ PE=1 SV=1 FABZ_PSEA8 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain LESB58) GN=f... FABZ_PSEAB - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) ...	186.0	[0..1]	[143..2]
FABZ_PSEPF - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas fluorescens (strain Pf0-1) GN=f...	186.0	[0..1]	[143..2]
gi\|90413540, gi\|... - gi\|90413540\|ref\|ZP_01221531.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium profundum 3TCK]...	186.0	[0..1]	[143..8]
gi\|24983083, gi\|... - gi\|26988334\|ref\|NP_743759.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas putida KT2440], gi\|2...	186.0	[0..1]	[143..19]

Back

Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDINEILQYL PHRYPFLLVD RVLEIEEGKR ILALKNVTMN EPFFPGHFPH HPVMPGVLIV  60
   61 EAMAQAAALL SFKSMGVKPD ENSVVYFAGI DNVRFKRPVV PGDQLLFDVV ITQSKRNIYK 120
  121 YKGVARVDGE LATEAELTCA LKTLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: