YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_AROAE
Organism:	Aromatoleum aromaticum EbN1
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_AROAE.

Description	E-value	Query Range	Subject Range
RL31_THIDA - 50S ribosomal protein L31 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmE PE=3 SV=1	124.0	[0..1]	[67..1]
gi\|62257737 - gi\|62257737\|gb\|AAX77735.1\| unknown protein [synthetic construct]	123.0	[0..1]	[70..40]
gi\|114771531, gi... - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255], ... gi\|114771531 - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255] gi\|221133921 - gi\|221133921\|ref\|ZP_03560226.1\| 50S ribosomal subunit protein L31 [Glaciecola sp. HTCC2999]	122.0	[0..1]	[71..1]
gi\|153840404, gi... - gi\|153840404\|ref\|ZP_01993071.1\| ribosomal protein L31 [Vibrio parahaemolyticus AQ3810], gi\|149745932... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmE PE... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus GN=rpmE PE=3 SV=1	121.0	[0..1]	[71..1]
RL31_ALTMD - 50S ribosomal protein L31 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpmE1 PE=3 S... RL31_ALTMD - 50S ribosomal protein L31 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / D...	121.0	[0..1]	[71..1]
gi\|91187416, gi\|... - gi\|91229291\|ref\|ZP_01262908.1\| 50S ribosomal protein L31 [Vibrio alginolyticus 12G01], gi\|91187416\|g... gi\|75854325, gi\|... - gi\|75854325\|ref\|ZP_00762025.1\| COG0254: Ribosomal protein L31 [Vibrio sp. Ex25], gi\|116183924\|ref\|ZP...	121.0	[0..1]	[71..1]
RL31_HISS2 - 50S ribosomal protein L31 OS=Histophilus somni (strain 2336) GN=rpmE PE=3 SV=1	120.0	[0..1]	[71..1]
RL31_FRATM - 50S ribosomal protein L31 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rpmE PE=3... RL31_FRATT - 50S ribosomal protein L31 OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=r... gi\|162329652 - gi\|162329652\|ref\|YP_001122507.2\| 50S ribosomal protein L31 [Francisella tularensis subsp. tularensis... RL31_FRAT1 - 50S ribosomal protein L31 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpmE PE=3 ... RL31_FRATT - 50S ribosomal protein L31 OS=Francisella tularensis subsp. tularensis GN=rpmE PE=3 SV=1 gi\|224456582 - gi\|224456582\|ref\|ZP_03665055.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. tularensis ...	120.0	[0..1]	[70..1]
gi\|115129936, gi... - gi\|115315037\|ref\|YP_763760.1\| ribosomal protein L31 [Francisella tularensis subsp. holarctica OSU18]... gi\|156502744, gi... - gi\|156502744\|ref\|YP_001428809.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica...	120.0	[0..1]	[70..14]
gi\|88819060, gi\|... - gi\|88858834\|ref\|ZP_01133475.1\| 50S ribosomal subunit protein L31 [Pseudoalteromonas tunicata D2], gi...	120.0	[0..1]	[71..5]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKADIHPKYA EVQVTCSCGN TFETRSTLGK PALHVEVCAA CHPFYTGKQK IVDTAGRVER  60
   61 FRQKYGNVQR LG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits