YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_MANSM
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_MANSM.

Description	E-value	Query Range	Subject Range
gi\|52306555, gi\|... - gi\|52424503\|ref\|YP_087640.1\| RpmE protein [Mannheimia succiniciproducens MBEL55E], gi\|52306555\|gb\|AA...	123.0	[0..1]	[71..5]
RL31_PSEHT - 50S ribosomal protein L31 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmE PE=3 SV=1	123.0	[0..1]	[71..1]
RL31_ACTSZ - 50S ribosomal protein L31 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmE PE=3 SV=...	122.0	[0..1]	[71..1]
gi\|62182555, gi\|... - gi\|62182555\|ref\|YP_218972.1\| 50S ribosomal protein L31 [Salmonella enterica subsp. enterica serovar ...	122.0	[0..1]	[70..34]
gi\|88819060, gi\|... - gi\|88858834\|ref\|ZP_01133475.1\| 50S ribosomal subunit protein L31 [Pseudoalteromonas tunicata D2], gi...	122.0	[0..1]	[71..5]
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	121.0	[0..1]	[71..30]
gi\|114771531, gi... - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255], ... gi\|114771531 - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255] gi\|221133921 - gi\|221133921\|ref\|ZP_03560226.1\| 50S ribosomal subunit protein L31 [Glaciecola sp. HTCC2999]	121.0	[0..1]	[70..1]
RL31_HISS2 - 50S ribosomal protein L31 OS=Histophilus somni (strain 2336) GN=rpmE PE=3 SV=1	121.0	[0..1]	[70..1]
RL31_ALTMD - 50S ribosomal protein L31 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpmE1 PE=3 S... RL31_ALTMD - 50S ribosomal protein L31 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / D...	121.0	[0..1]	[70..1]
gi\|113461613, gi... - gi\|113461613\|ref\|YP_719682.1\| 50S ribosomal protein L31P [Haemophilus somnus 129PT], gi\|112823656\|gb...	120.0	[0..1]	[70..8]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGIHPEYK EITVTCSCGN VIKTRSTAGH DINLDVCGNC HPFYTGKQRV VDTGGRVERF  60
   61 NKRFSIPGSK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.09691
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits