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View Structure Prediction Details

Protein: RNPH_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPH_PHOLL.

Description E-value Query
Range
Subject
Range
gi|107104436 - gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
282.0 [0..2] [238..3]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTGRAAEQ VRPITITRHY TKHAEGSVLV EFGDTKVLCN ASVEEGVPRF LKGQGQGWVT  60
   61 AEYGMLPRST HTRNAREAAR GKQGGRTMEI QRLIARSLRA AVDLKKLGEY TITLDCDVIQ 120
  121 ADGGTRTASI TGACVALVDA LNKIVEAGKL KESPLKSMVA AVSVGIVDGE GRCDLEYVED 180
  181 SAAETDMNVV MMEDGRMIEV QGTAEGEPFS HDELLSLLAL AKGGLEDIFD AQRNALKQNA 240
  241 LK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 1r6lA
Description: Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribonuclease activity 2.56399046328775 bayes_pls_golite062009
polyribonucleotide nucleotidyltransferase activity 1.91194827528589 bayes_pls_golite062009
catalytic activity 1.24889475603062 bayes_pls_golite062009
hydrolase activity 1.07767181032042 bayes_pls_golite062009
exoribonuclease activity 0.98086935928487 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 0.92844426728299 bayes_pls_golite062009
peptidase activity 0.251251352515662 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle