YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_NITEU
Organism:	Nitrosomonas europaea
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_NITEU.

Description	E-value	Query Range	Subject Range
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	111.0	[0..5]	[76..3]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	111.0	[0..5]	[76..3]
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	109.0	[0..4]	[72..51]
RS18_DEHM1 - 30S ribosomal protein S18 OS=Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) GN=r...	108.0	[0..3]	[76..15]
gi\|223479392, gi... - gi\|254427140\|ref\|ZP_05040847.1\| ribosomal protein S18 [Alcanivorax sp. DG881], gi\|223479392\|ref\|YP_0... RS18_ALCBS - 30S ribosomal protein S18 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	108.0	[0..5]	[76..3]
RS18_NITMU - 30S ribosomal protein S18 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsR PE=3...	108.0	[0..2]	[76..20]
RS18_PSYIN - 30S ribosomal protein S18 OS=Psychromonas ingrahamii (strain 37) GN=rpsR PE=3 SV=1	108.0	[0..5]	[76..3]
RS18_THICR - 30S ribosomal protein S18 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsR PE=3 SV=1	108.0	[0..5]	[76..3]
RS18_METCA - 30S ribosomal protein S18 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rp... RS18_METCA - 30S ribosomal protein S18 OS=Methylococcus capsulatus GN=rpsR PE=3 SV=1	107.0	[0..5]	[76..3]
RS18_BACSK - 30S ribosomal protein S18 OS=Bacillus clausii (strain KSM-K16) GN=rpsR PE=3 SV=1	107.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRPLFKRK KFCRFTAEGI KHIDYKDIDL LKDFVSENGR IIPARITGTR AYYQRQLNLA  60
   61 IERARFLALL PYTDQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1vs5R
Description:	No description for 1vs5R was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits