YRC Public Data Repository - Protein Structure Prediction

Protein:	YEGP_SHIFL
Organism:	Shigella flexneri
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEGP_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|49529919, gi\|... - gi\|50083943\|ref\|YP_045453.1\| hypothetical protein ACIAD0721 [Acinetobacter sp. ADP1], gi\|49529919\|em...	159.0	[0..1]	[110..2]
gi\|82703287, gi\|... - gi\|82703287\|ref\|YP_412853.1\| hypothetical protein Nmul_A2168 [Nitrosospira multiformis ATCC 25196], ...	157.0	[0..1]	[110..1]
gi\|85710852, gi\|... - gi\|85710852\|ref\|ZP_01041913.1\| hypothetical protein OS145_02455 [Idiomarina baltica OS145], gi\|85695...	155.0	[0..1]	[110..1]
gi\|21958152, gi\|... - gi\|22125279\|ref\|NP_668702.1\| hypothetical protein y1380 [Yersinia pestis KIM], gi\|21958152\|gb\|AAM849... gi\|45442493, gi\|... - gi\|45442493\|ref\|NP_994032.1\| hypothetical protein YP_2720 [Yersinia pestis biovar Microtus str. 9100...	155.0	[0..1]	[110..16]
gi\|49176186, gi\|... - gi\|49176186\|ref\|NP_416584.3\| hypothetical protein b2080 [Escherichia coli K12], gb\|AAC75141.1\| orf, ... gi\|7466285 - gi\|7466285\|pir\|\|G64974 hypothetical protein b2080 - Escherichia coli (strain K-12)	154.0	[0..1]	[110..14]
gi\|74312605, gi\|... - gi\|74312605\|ref\|YP_311024.1\| hypothetical protein SSON_2133 [Shigella sonnei Ss046], gi\|73856082\|gb\|... gi\|82543454, gi\|... - gi\|82543454\|ref\|YP_407401.1\| hypothetical protein SBO_0906 [Shigella boydii Sb227], gi\|81244865\|gb\|A...	154.0	[0..1]	[110..14]
gi\|91072942, gi\|... - gi\|91211368\|ref\|YP_541354.1\| hypothetical protein UTI89_C2355 [Escherichia coli UTI89], gi\|91072942\|... gi\|237704537, gi... - gi\|237704537\|ref\|ZP_04535018.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117624276, gi... - gi\|117624276\|ref\|YP_853189.1\| hypothetical protein APECO1_1170 [Escherichia coli APEC O1], gi\|115513... gi\|26108859, gi\|... - gi\|26248454\|ref\|NP_754494.1\| hypothetical protein c2606 [Escherichia coli CFT073], gi\|26108859\|gb\|AA...	154.0	[0..1]	[110..14]
gi\|30063525, gi\|... - gi\|30063525\|ref\|NP_837696.1\| hypothetical protein S2270 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|110806050, gi... - gi\|110806050\|ref\|YP_689570.1\| hypothetical protein SFV_2141 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24113462, gi\|... - gi\|24113462\|ref\|NP_707972.1\| hypothetical protein SF2145 [Shigella flexneri 2a str. 301], gi\|2405249...	154.0	[0..1]	[110..14]
gi\|25358971, gi\|... - pir\|\|C85835 hypothetical protein Z3249 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516289, gi\|... - gi\|15802561\|ref\|NP_288588.1\| hypothetical protein Z3249 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	153.0	[0..1]	[110..14]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGWFELSKS SDNQFRFVLK AGNGETILTS ELYTSKASAE KGIASVRSNS PQEERYEKKT  60
   61 ASNGKFYFNL KAANHQIIGS SQMYATAQSR ETGIASVKAN GTSQTVKDNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.855	c.55.1	Actin-like ATPase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits